1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctttgtgttgtttgacttgcaattgactgagcgatggggattgactttgggatgtagtaatcgtgacatcttgtgtttctttgtgattcattggcaacagGACTACGTGCCAACTGTCTTTGACAATTTCAGTGCAAATGTAGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTG
species | Glycine max |
transcript | GLYMA12G03660.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGGCAAGACTTGCATGCTCATCTCCTACACCAGCAACACTTTTCCTACG GACTACGTGCCAACTGTCTTTGACAATTTCAGTGCAAATGTAGTTGTGGATEST: gi|208210668|gb|GE011729.1|GE011729
genomic: TTGGCAAGACTTGCATGCTCATCTCCTACACCAGCAACACTTTTCCTACGgtcagtgcta ... ttggcaacagGACTACGTGCCAACTGTCTTTGACAATTTCAGTGCAAATGTAGTTGTGGAT
EST: TTGGCAAGACTTGCATGCTCATCTCCTACACCAGCAACACTTTTCCTACG GACTACGTGCCAACTGTCTTTGACAATTTCAGTGCAAATGTAGTTGTGGATEST: gi|58020948|gb|CX707690.1|CX707690
genomic: TTGGCAAGACTTGCATGCTCATCTCCTACACCAGCAACACTTTTCCTACGgtcagtgcta ... ttggcaacagGACTACGTGCCAACTGTCTTTGACAATTTCAGTGCAAATGTAGTTGTGGAT
EST: TACACCAGCAACACTTTTCTTACG GACTACGTGCCAACTGTCTTTGACAATTTCAGTGCAAATGTAGTTGTGGATEST: gi|151401174|gb|EV270988.1|EV270988
genomic: TACACCAGCAACACTTTTCCTACGgtcagtgcta ... ttggcaacagGACTACGTGCCAACTGTCTTTGACAATTTCAGTGCAAATGTAGTTGTGGAT
EST: TTGGCAAGACTTGCATGCTCATCTCCTACACCAGCAACACTTTTCCTACG GACTACGTGCCAACTGTCTTTGACAATTTCAGTGCAAATGTAGTTGTGGATEST: gi|308222701|gb|HO760611.1|HO760611
genomic: TTGGCAAGACTTGCATGCTCATCTCCTACACCAGCAACACTTTTCCTACGgtcagtgcta ... ttggcaacagGACTACGTGCCAACTGTCTTTGACAATTTCAGTGCAAATGTAGTTGTGGAT
EST: TTGGCAAGACTTGCATGCTCATCTCCTACACCAGCAACACTTTTCCTACG GACTACGTGCCAACTGTCTTTGACAATTTCAGTGCAAATGTAGTTGTGGATEST: gi|298170161|gb|HO018785.1|HO018785
genomic: TTGGCAAGACTTGCATGCTCATCTCCTACACCAGCAACACTTTTCCTACGgtcagtgcta ... ttggcaacagGACTACGTGCCAACTGTCTTTGACAATTTCAGTGCAAATGTAGTTGTGGAT
EST: TTGGCAAGACTTGCATGCTCATCTCCTACACCAGCAACACTTTTCCTACG GACTACGTGCCAACTGTCTTTGACAATTTCAGTGCAAATGTAGTTGTGGATEST: gi|192329144|gb|FK021131.1|FK021131
genomic: TTGGCAAGACTTGCATGCTCATCTCCTACACCAGCAACACTTTTCCTACGgtcagtgcta ... ttggcaacagGACTACGTGCCAACTGTCTTTGACAATTTCAGTGCAAATGTAGTTGTGGAT
EST: TTGGCAAGACTTGCATGCTCATCTCCTACACCAGCAACACTTTTCCTACG GACTACGTGCCAACTGTCTTTGACAATTTCAGTGCAAATGTAGTTGTGGATEST: gi|298172850|gb|HO019834.1|HO019834
genomic: TTGGCAAGACTTGCATGCTCATCTCCTACACCAGCAACACTTTTCCTACGgtcagtgcta ... ttggcaacagGACTACGTGCCAACTGTCTTTGACAATTTCAGTGCAAATGTAGTTGTGGAT
EST: TTGGCAAGACTTGCATGCTCATCTCCTACACCAGCAACACTTTTCCTACG GACTACGTGCCAACTGTCTTTGACAATTTCAGTGCAAATGTAGTTGTGGAT
genomic: TTGGCAAGACTTGCATGCTCATCTCCTACACCAGCAACACTTTTCCTACGgtcagtgcta ... ttggcaacagGACTACGTGCCAACTGTCTTTGACAATTTCAGTGCAAATGTAGTTGTGGAT
tttgggatgtagtaatcgtgacatcttgtgtttctttgtgattcattggcaacagGACTACGTGCCAACTGTCTTTGACAATTTCAGTGCAAATGTAGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTG
tagtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttgtgttgtttgacttgcaattgactgagcgatggggattgactttgggatgtagtaatcgtgacatcttgtgtttctttgtgattcattggcaacagGACTACGTGCCAACTGTCTTTGACAATTTCAGTGCAAATGTAGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
ctttgtg
- - - -ttgtttg
- - - - - - - -cttgcaa
- - - - - - - - - - - ttgactg
- - - - - - - - - - - - - - - - gatgggg
- - - - - - - - - - - - - - - - - - - - - gactttg