1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtcgtttctattcattgtcaatcacacaaattcccaattaatacttttattttgtgaccaagcaattgcattgtatagtctttggtattttagatcagatccatgagatgctatggtagcttctgatcccgtttttgataattttgatttttgaatttttcagGAGTTGGTGGCTATACTTATCTACTAGAGCCGCTTTGGTGGGCTGGCATGGTGACAA
species | Glycine max |
transcript | GLYMA12G03390.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTGAAGAAGAAGGGTCTTAAGCGTGCTGCTGCACGCGTTACTCGTGCAG GAGTTGGTGGCTATACTTATCTACTAGAGCCGCTTTGGTGGGCTGGCATGGEST: gi|193670408|gb|FK611538.1|FK611538
genomic: CTTGAAGAAGAAGGGTCTTAAGCGTGCTGCTGCACGCGGTACTCGTGCAGgtcgtttcta ... aatttttcagGAGTTGGTGGCTATACTTATCTACTAGAGCCGCTTTGGTGGGCTGGCATGG
EST: CTTGAAGAAGAAGGGTCTTAAGCGTGCTGCTGCACGCGGTACTCGTGCAG GAGTTGGTGGCTATACTTATCTACTAGAGCCGCTTTGGTGGGCTGGCATGGEST: gi|208146188|gb|GD944849.1|GD944849
genomic: CTTGAAGAAGAAGGGTCTTAAGCGTGCTGCTGCACGCGGTACTCGTGCAGgtcgtttcta ... aatttttcagGAGTTGGTGGCTATACTTATCTACTAGAGCCGCTTTGGTGGGCTGGCATGG
EST: CTTGAAAAAGAAGGGTCTTAAGCGTGCTGCTGCACGCGGTACTCGTGCAG GAGTTGGTGGCTATACTTATCTACTAGAGCCGCTTTGGTGGGCTGGCATGG
genomic: CTTGAAGAAGAAGGGTCTTAAGCGTGCTGCTGCACGCGGTACTCGTGCAGgtcgtttcta ... aatttttcagGAGTTGGTGGCTATACTTATCTACTAGAGCCGCTTTGGTGGGCTGGCATGG
tgctatggtagcttctgatcccgtttttgataattttgatttttgaatttttcagGAGTTGGTGGCTATACTTATCTACTAGAGCCGCTTTGGTGGGCTGGCATGGTGACAA
tttttc CT-rich tract
tttttgataattttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcgtttctattcattgtcaatcacacaaattcccaattaatacttttattttgtgaccaagcaattgcattgtatagtctttggtattttagatcagatccatgagatgctatggtagcttctgatcccgtttttgataattttgatttttgaatttttcagGAGTTGGTGGCTATACTTATCTACTAGAGCCGCTTTGGTGGGCTGGCATGGTGACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG