1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tttggaatttgattttaagatatgaattttatatactctttttcagtggtttgaaagtggatggaactgacgagtatattttttgttttggaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAGGTGGCAGCTCCAGATACCTGGCCAAGAAATTTGGAGCAACCAGCGTAGG
species | Glycine max |
transcript | GLYMA12G01680.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAGEST: gi|57575258|gb|CX548233.1|CX548233
genomic: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtatatttag ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
EST: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAGEST: gi|192319801|gb|FK013801.1|FK013801
genomic: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtatatttag ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
EST: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAGEST: gi|14125812|gb|BG790250.1|BG790250
genomic: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtatatttag ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
EST: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAGEST: gi|151406224|gb|EV276039.1|EV276039
genomic: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtatatttag ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
EST: GAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAGEST: gi|120531233|gb|EH259366.1|EH259366
genomic: GAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtatatttag ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
EST: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAGEST: gi|58023365|gb|CX710106.1|CX710106
genomic: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtatatttag ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
EST: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAGEST: gi|13482030|gb|BG511373.1|BG511373
genomic: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtatatttag ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
EST: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAGEST: gi|26056288|gb|CA799202.1|CA799202
genomic: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtatatttag ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
EST: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAGEST: gi|19346081|gb|BM890961.1|BM890961
genomic: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtatatttag ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
EST: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
genomic: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtatatttag ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
gtggtttgaaagtggatggaactgacgagtatattttttgttttggaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAGGTGGCAGCTCCAGATACCTGGCCAAGAAATTTGGAGCAACCAGCGTAGG
aactgac putative branch site (score: 2)
agtatattttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttggaatttgattttaagatatgaattttatatactctttttcagtggtttgaaagtggatggaactgacgagtatattttttgttttggaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAGGTGGCAGCTCCAGATACCTGGCCAAGAAATTTGGAGCAACCAGCGTAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA