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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtactacaattccccttctctcccttcttttatttagggtttcttaatcattttctcttcactaaatggaagaatactgtcgtattttacagTTATGTCTGAGGATATGGTCAAAGATGGTTACGAGGACATCGTCAATATTGATATTTCTTCTGTTGCAATTGACATGATGAGAACAAAATATGAGTACAT

Basic information

species Glycine max
transcript GLYMA12G01270.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G01270.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G60910.1 (Arabidopsis thaliana), 3'ss of exon 1
---------------gttggtactacaattccccttctct---cccttcttttatttagggtt---tcttaatcattttctcttcacta-aatggaagaatactgtcgtattttacagTTATGTCTGAGGATATGGTCAAAGATGGTTACGAGGACATCGTCAATATTGATATTTCTTCTGTTGCAATTGACATGATGAGAACAAAATATGAGTACAT
                |||  | || | ||       |||   ||  |  || | || |  ||       || ||  ||   | ||||   || |     | ||    | |  |  ||| ||||| ||||||||||| || ||||| || ||||||||| | ||| ||||||| ||||| || || ||||| ||||||  ||| |||||||  |   |
gtaattctctctccttttgccaatagatttgaagaagtctgtaccagtgattgaatttgacttgagcagcaaccaaatttaatacactgtgattgccctgttcttctctttggtgtagTGATGTCAGAGGATATGGTGAAGGATGGGTATGAGGACATCATGAATGTTGATATCTCTTCAGTGGCTATTGAGATGATGCAAACCAAATATGCATCTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298172641|gb|HO019681.1|HO019681
EST:     TTTCACCCCTCTTTCTTCCAGGATTCTCATGGTTGGTTGCGGCAATGCTG                         TTATGTCTGAGGATATGGTCAAAGATGGTTACGAGGACATCGTCAATATTG
genomic: TTTCATCCCTCTTTCTTCCAGGATTCTCATGGTTGGTTGCGGCAATGCTGgttggtacta ... tattttacagTTATGTCTGAGGATATGGTCAAAGATGGTTACGAGGACATCGTCAATATTG
EST: gi|4397532|gb|AI496529.1|AI496529
EST:     TTTCATCCCTCTTTCTTCCAGGATTCTCATGGTTGGTTGCGGCAATGCTG                         TTATGTCTGAGGATATGGTCAAAGATGGTTACGAGGACATCGTCAATATTG
genomic: TTTCATCCCTCTTTCTTCCAGGATTCTCATGGTTGGTTGCGGCAATGCTGgttggtacta ... tattttacagTTATGTCTGAGGATATGGTCAAAGATGGTTACGAGGACATCGTCAATATTG
EST: gi|15287181|gb|BI471072.1|BI471072
EST:     TTTCATCCCTCTTTCTTCCAGGATTCTCATGGTTGGTTGCGGCAATGCTG                         TTATGTCTGAGGATATGGTCAAAGATGGTTACGAGGACATCGTCAATATTG
genomic: TTTCATCCCTCTTTCTTCCAGGATTCTCATGGTTGGTTGCGGCAATGCTGgttggtacta ... tattttacagTTATGTCTGAGGATATGGTCAAAGATGGTTACGAGGACATCGTCAATATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtttcttaatcattttctcttcactaaatggaagaatactgtcgtattttacagTTATGTCTGAGGATATGGTCAAAGATGGTTACGAGGACATCGTCAATATTGATATTTCTTCTGTTGCAATTGACATGATGAGAACAAAATATGAGTACAT
                      cactaaa  putative branch site (score: 2)
      ttaatcatttt  TA-rich tract