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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaagggttgtttgtattcattacctattattaaatgtagaatttgcttgagcatgaaggctctcactagctgttgatttgtgtgttctgttttccaatagGGAATCGGGTGATCCAGGCAAGAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATG

Basic information

species Glycine max
transcript GLYMA12G00830.4
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G00830.3 (Glycine max), 3'ss of exon 1
lower sequence: AT5G61500.1 (Arabidopsis thaliana), 3'ss of exon 1
--aaagggttgtttgtattcattacctattattaaatgtagaatttgcttgagcatgaaggctctcactagctgttgatttgtgtgttctgttttccaatagGGAATCGGGTGATCCAGGCAAGAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATG
  |     | || | |      ||  |     ||| ||  || | |   |     ||   |        |||| |       ||  || |  |||  | ||||||||| |||||  || |||| |||||||||||||||||  | || |||||||| ||||||||||||||||
tcacgctttagtatatgactgctagttcaagctaattggcga-tatctatatctttgcttgaatgggtaagct-tgacacaatggcttttacttttgattagGGAATCTGGTGACGCAAGCAAAAGGAAGCCATACTTGCCCTCGGACAAACAGTTTTTGATTACTAGAAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7684723|gb|AW755371.1|AW755371
EST:     TCGTCACCGCTGGCGATAATCTCGTTGCCAAATGCCCCACCTTGTTCTTG                         GGAATCGGGTGATCCAGGCAAGAGGAAGCCATACTTGCCACCTGAGAAAC
genomic: TCGTCACCGCTGGCGATAATCTCGTTGCCAAATGCCCCACCTGGTCCT-Ggtaattccaa ... tttccaatagGGAATCGGGTGATCCAGGCAAGAGGAAGCCATACTTGCCACCTGAGAAAC
EST: gi|192306687|gb|FG998085.1|FG998085
EST:     TTCGTCACCGCTGGCGATAATCTCGTTGCCAAATGCCCCACCTGGTCCTG                         GGAATCGGGTGATCCAGGCAAGAGGAAGCCATACTTGCCACCTGAGAAACA
genomic: TTCGTCACCGCTGGCGATAATCTCGTTGCCAAATGCCCCACCTGGTCCTGgtaattccaa ... tttccaatagGGAATCGGGTGATCCAGGCAAGAGGAAGCCATACTTGCCACCTGAGAAACA
EST: gi|298186631|gb|HO037264.1|HO037264
EST:     TTCGTCACCGCTGGCGATAATCTCGTTGCCAAATGCCCCACCTGGTCCTG                         GGAATCGGGTGATCCAGGCAAGAGGAAGCCATACTTGCCACCTGAGAAACA
genomic: TTCGTCACCGCTGGCGATAATCTCGTTGCCAAATGCCCCACCTGGTCCTGgtaattccaa ... tttccaatagGGAATCGGGTGATCCAGGCAAGAGGAAGCCATACTTGCCACCTGAGAAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgagcatgaaggctctcactagctgttgatttgtgtgttctgttttccaatagGGAATCGGGTGATCCAGGCAAGAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATG
                                       ttctgttttcc  CT-rich tract
                           ttgattt  TA-rich tract