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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattctttcttctctcccacttttctttccattcatcccttcattttattttcacctaaccactcttgttttgttctttcactagCTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGCCCTGTCAATGCAGTTACGATGTCACCTCTTCTTGATCAT

Basic information

species Glycine max
transcript GLYMA12G00510.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G00510.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv01s0011g06630.t01 (Vitis vinifera), 3'ss of exon 4
-----------------------------------------gtattctttcttctctcccactt-ttctttccattcatcc---------cttcattttattttcacctaaccactcttgttttgttct----ttcactagCTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGCCCTGTCAATGCAGTTACGATGTCACCTCTTCTTGATCAT
                                          |||     | ||| | |||||| || | |  |||  ||          ||||||    ||||  ||| |    | || | ||||       |    ||||||||||| |  ||| | || || ||||||||||||||| | || |||||||| |||||||||||||| ||||| || ||||||||||||
gtagcataactcattgttttataattctgtgcccattacttttatctcaccctctgtaccacttattatctttatttttctattttggagcttcatcaagttttttcctgat-gttgttttcttgtcgacaaatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGCCCGGTCAATGCAGTTACAATGTCTCCACTTCTTGATCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192329074|gb|FK021427.1|FK021427
EST:     CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGG                         CTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
genomic: CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGGgtattctttc ... ctttcactagCTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
EST: gi|9203630|gb|BE329854.1|BE329854
EST:     ATAAGTCTGCTAGG                         CTTTGGAATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
genomic: ATAAGTCTGCTAGGgtattctttc ... ctttcactagCTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
EST: gi|193329519|gb|FK296085.1|FK296085
EST:     CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGG                         CTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACAC
genomic: CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGGgtattctttc ... ctttcactagCTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
EST: gi|193672367|gb|FK617169.1|FK617169
EST:     CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGG                         CTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAAACG
genomic: CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGGgtattctttc ... ctttcactagCTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAA-CG
EST: gi|105633761|gb|DW247124.1|DW247124
EST:     CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGG                         CTTTGGGATACTAGGTCATTGACTCTTATCAAGGCCTATGTCACGGAACGC
genomic: CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGGgtattctttc ... ctttcactagCTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
EST: gi|208029101|gb|GD830597.1|GD830597
EST:     CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGG                         CTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
genomic: CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGGgtattctttc ... ctttcactagCTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
EST: gi|193727187|gb|FK659855.1|FK659855
EST:     CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGG                         CTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
genomic: CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGGgtattctttc ... ctttcactagCTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
EST: gi|14011261|gb|BG726192.1|BG726192
EST:     CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGG                         CTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
genomic: CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGGgtattctttc ... ctttcactagCTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
EST: gi|192308991|gb|FK001767.1|FK001767
EST:     CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGG                         CTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
genomic: CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGGgtattctttc ... ctttcactagCTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
EST: gi|209727428|gb|BW663714.1|BW663714
EST:     CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGG                         CTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
genomic: CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGGgtattctttc ... ctttcactagCTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
EST: gi|207793286|gb|GD767488.1|GD767488
EST:     CCGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGG                         CTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
genomic: CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGGgtattctttc ... ctttcactagCTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
EST: gi|15285352|gb|BI469243.1|BI469243
EST:     CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGG                         CTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
genomic: CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGGgtattctttc ... ctttcactagCTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
EST: gi|208170015|gb|GD967010.1|GD967010
EST:     CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGG                         CTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
genomic: CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGGgtattctttc ... ctttcactagCTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
EST: gi|193380787|gb|FK346070.1|FK346070
EST:     CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGG                         CTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
genomic: CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGGgtattctttc ... ctttcactagCTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
EST: gi|192329075|gb|FK021428.1|FK021428
EST:     CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGG                         CTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
genomic: CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGGgtattctttc ... ctttcactagCTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
EST: gi|193650444|gb|FK600257.1|FK600257
EST:     CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGG                         CTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
genomic: CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGGgtattctttc ... ctttcactagCTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
EST: gi|151409323|gb|EV279131.1|EV279131
EST:     CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGG                         CTTTGGGATACTAG-TCATTGACTCTTATCAAGACCTATGTCACGGAACGC
genomic: CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGGgtattctttc ... ctttcactagCTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
EST: gi|193577140|gb|FK537469.1|FK537469
EST:     ATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGG                         CTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
genomic: ATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGGgtattctttc ... ctttcactagCTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
EST: gi|207801078|gb|GD772457.1|GD772457
EST:     TTACTGGTTCCCTTGATAAGTCTGCTAGG                         CTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
genomic: TTACTGGTTCCCTTGATAAGTCTGCTAGGgtattctttc ... ctttcactagCTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
EST: gi|193403068|gb|FK369014.1|FK369014
EST:     CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGG                         CTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
genomic: CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGGgtattctttc ... ctttcactagCTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
EST: gi|22525375|gb|BU084186.1|BU084186
EST:     CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGG                         CTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
genomic: CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGGgtattctttc ... ctttcactagCTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGC
EST: gi|192308990|gb|FK001766.1|FK001766
EST:     CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAG-                         CTTTGGGATACTAG-TCATTGACTCTTATCAAGACCTATGTCACGGAA
genomic: CTGCCGATGATTCACATTTCCTTACTGGTTCCCTTGATAAGTCTGCTAGGgtattctttc ... ctttcactagCTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcatcccttcattttattttcacctaaccactcttgttttgttctttcactagCTTTGGGATACTAGGTCATTGACTCTTATCAAGACCTATGTCACGGAACGCCCTGTCAATGCAGTTACGATGTCACCTCTTCTTGATCAT
                       acctaac  putative branch site (score: 2)
                             ccactcttgttttgtt  CT-rich tract
         ttcattttattttca  TA-rich tract