1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtattcacatccctcttctctttttcctgtctcgtttttctccgatttctttcattttcgcatatttgtgtattttcttatgaacttttgcctgatttttgtttactggtgatttttcaaatcagGATATGCTGCTAACAG
species | Glycine max |
transcript | GLYMA11G37380.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCCGCTGCAATTGTTAGCGAGTTCTTCG GATATGCTGCTAACAGEST: gi|24206284|gb|BU965537.1|BU965537
genomic: TTCCGCTGCAATTGTTAGCGAGTTCTTCGgtattcacat ... ttcaaatcagGATATGCTGCTAACAG
EST: AGACATAATCACTCTTCGCGGTTCCGCTGCAATTGTTAGCGAGTTCTTCG GATATGCTGCTAACAG
genomic: AGACATAATCACTCTTCGCGGTTCCGCTGCAATTGTTAGCGAGTTCTTCGgtattcacat ... ttcaaatcagGATATGCTGCTAACAG
tattttcttatgaacttttgcctgatttttgtttactggtgatttttcaaatcagGATATGCTGCTAACAG
gcctgat putative branch site (score: 4)
tttttc putative PPT
atttttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattcacatccctcttctctttttcctgtctcgtttttctccgatttctttcattttcgcatatttgtgtattttcttatgaacttttgcctgatttttgtttactggtgatttttcaaatcagGATATGCTGCTAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT