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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaaccataaattttgtgctgcttttctccttcaacatgtttcttcaagtttatgatgttattttacgcatccataaatcggtaatttttgctcttttcttctgttccttagGCTGAAAAATGAAACTGAGTCCAAGGGAGATCGAGAAACTAGACCTGCATAATGCAGGCTACCTTGCACAGAAACGCCTTGCTCGTGGTTTAAGGCTCAA

Basic information

species Glycine max
transcript GLYMA11G37250.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193434937|gb|FK402909.1|FK402909
EST:     GCCGTATTCCTAAGCTTAGGCTTTCAATCTGAATTTCTGAATTCTCTGCT                         GCTGAAAAATGAAACTGAGTCCAAGGGAGATCGAGAAACTAGACCTGCATA
genomic: GCCGTATTCCTAAGCTTAGGCTTTCAATCTGAATTTCTGAATTCTCTGCTgtaacaacca ... tgttccttagGCTGAAAAATGAAACTGAGTCCAAGGGAGATCGAGAAACTAGACCTGCATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttattttacgcatccataaatcggtaatttttgctcttttcttctgttccttagGCTGAAAAATGAAACTGAGTCCAAGGGAGATCGAGAAACTAGACCTGCATAATGCAGGCTACCTTGCACAGAAACGCCTTGCTCGTGGTTTAAGGCTCAA
                         taatttttgctctttt  CT-rich tract
                         taattttt  TA-rich tract