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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaaccggcaccaaacaatgattctcagctttttcctctgaaattcgctttttagatctcatagtaacgctgtttcgttttctcttttttcttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT

Basic information

species Glycine max
transcript GLYMA11G37160.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G37160.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv01s0010g03370.t01 (Vitis vinifera), 3'ss of exon 2
gtaagtaaccggcaccaaacaatgattctcagctttttcctctgaaattcgctttttagatctcatagtaacgctgtt--tcgttttctcttt--tttcttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
                      |  | | |   |||||  |     ||||  |  |    | || | ||| | || |   |  |  ||| |||    | |||| ||||||||||||||||||||| || ||||||||||||||||
---------------------gtagtgcccttttttttttttcctcattcattcctcttgt-tctttgtagctctataaatgatcatctgtttggcgtattttttcagGTGAAGTACTCCAGAGAGCCAGACAATCCCACCAAGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209723027|gb|BW668873.1|BW668873
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|209707520|gb|BW664979.1|BW664979
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|58018377|gb|CX705119.1|CX705119
EST:     CTGCTTCAACC-TGCGGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: CTGCTTCAACCTTGC-GGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|192299836|gb|FG990073.1|FG990073
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACCCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|15285877|gb|BI469768.1|BI469768
EST:     GTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: GTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|213620278|gb|DB961423.1|DB961423
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|192334007|gb|FK024820.1|FK024820
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAAAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|58021552|gb|CX708293.1|CX708293
EST:     CTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: CTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|213618470|gb|DB967707.1|DB967707
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|213602730|gb|DB968928.1|DB968928
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|192315909|gb|FK007070.1|FK007070
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|209728279|gb|BW658491.1|BW658491
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|10843191|gb|BF066504.1|BF066504
EST:     GAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: GAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|192330296|gb|FK019861.1|FK019861
EST:     AGCCGTTGCTCCGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|209696456|gb|BW655663.1|BW655663
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|298163726|gb|HO012459.1|HO012459
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|192300828|gb|FG989725.1|FG989725
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|298191987|gb|HO036069.1|HO036069
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|26059831|gb|CA802745.1|CA802745
EST:     GACGCCGCAGCCATG                         GCGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: GACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|9986842|gb|BE660950.1|BE660950
EST:     TCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: TCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|213592920|gb|DB966025.1|DB966025
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|58016113|gb|CX702855.1|CX702855
EST:     GCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: GCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|213603275|gb|DB970394.1|DB970394
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|213598906|gb|DB971934.1|DB971934
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|192304746|gb|FG998776.1|FG998776
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|14991547|gb|BI317220.1|BI317220
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|24205425|gb|BU964678.1|BU964678
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|209697265|gb|BW675476.1|BW675476
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|192315910|gb|FK007071.1|FK007071
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|213593378|gb|DB973571.1|DB973571
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|151403328|gb|EV273138.1|EV273138
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|151407792|gb|EV277607.1|EV277607
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|7685510|gb|AW756158.1|AW756158
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|213611894|gb|DB964814.1|DB964814
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|58014186|gb|CX700928.1|CX700928
EST:     CTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: CTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|213599443|gb|DB970377.1|DB970377
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgctttttagatctcatagtaacgctgtttcgttttctcttttttcttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
                tagtaac  putative branch site (score: 1)
                   taacgctgtttcgttt  CT-rich tract
                                       ttttttctttt  TA-rich tract