Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttttcctaccctgaacatctgccatttgggttttatccctcccttgttctgcactgcggccgataacaattttctgttttgtgtgatttttttgttctttgtttacagCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG

Basic information

species Glycine max
transcript GLYMA11G35450.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213590596|gb|DB968132.1|DB968132
EST:     AGGGTTTTCGCTTGAG                         CTCTGCGAGATCTTGAGTCGCCGATTAGAAAAGATGAG
genomic: AGGGTTTTCGCTTGAGgtatttttcc ... ttgtttacagCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG
EST: gi|151398425|gb|EV268296.1|EV268296
EST:     AACTAGGGTTTTCGCTTGAG                         CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG
genomic: AACTAGGGTTTTCGCTTGAGgtatttttcc ... ttgtttacagCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG
EST: gi|151400505|gb|EV270319.1|EV270319
EST:     AACTAGGGTTTTCGCTTGAG                         CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG
genomic: AACTAGGGTTTTCGCTTGAGgtatttttcc ... ttgtttacagCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG
EST: gi|192307782|gb|FG999261.1|FG999261
EST:     AACTAGGGTTTTCGCTTGAG                         CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG
genomic: AACTAGGGTTTTCGCTTGAGgtatttttcc ... ttgtttacagCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG
EST: gi|151393924|gb|EV263795.1|EV263795
EST:     AGGGTTTTCGCTTGAG                         CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG
genomic: AGGGTTTTCGCTTGAGgtatttttcc ... ttgtttacagCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG
EST: gi|298185503|gb|HO030716.1|HO030716
EST:     AGGGTTTTCGCTTGAG                         CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG
genomic: AGGGTTTTCGCTTGAGgtatttttcc ... ttgtttacagCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG
EST: gi|298190383|gb|HO032504.1|HO032504
EST:     TTTTCGCTTGAG                         CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG
genomic: TTTTCGCTTGAGgtatttttcc ... ttgtttacagCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG
EST: gi|209723425|gb|BW651353.1|BW651353
EST:     AGGGTTTTCGCTTGAG                         CTCTGCGAGATCTTGAGTCGCCGATTAGAAAAGATGAG
genomic: AGGGTTTTCGCTTGAGgtatttttcc ... ttgtttacagCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG
EST: gi|298163950|gb|HO013595.1|HO013595
EST:     AGGGTTTTCGCTTGAG                         CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG
genomic: AGGGTTTTCGCTTGAGgtatttttcc ... ttgtttacagCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG
EST: gi|298180009|gb|HO025224.1|HO025224
EST:     AACTAGGGTTTTCGCTTGAG                         CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG
genomic: AACTAGGGTTTTCGCTTGAGgtatttttcc ... ttgtttacagCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG
EST: gi|298165591|gb|HO011640.1|HO011640
EST:     AGGGTTTTCGCTTGAG                         CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG
genomic: AGGGTTTTCGCTTGAGgtatttttcc ... ttgtttacagCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG
EST: gi|192296219|gb|FG989760.1|FG989760
EST:     AGGGTTTTCGCTTGAG                         CTCTGCGAGGTCTTGAGTCGCCGATTTGAAAAGATGAG
genomic: AGGGTTTTCGCTTGAGgtatttttcc ... ttgtttacagCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG
EST: gi|209699176|gb|BW664353.1|BW664353
EST:     AGGGTTTTCGCTTGAG                         CTCTGCGAGATCTTGAGTCGCCGATTAGAAAAGATGAG
genomic: AGGGTTTTCGCTTGAGgtatttttcc ... ttgtttacagCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG
EST: gi|213619878|gb|DB971137.1|DB971137
EST:     GGGTTTTCGCTTGAG                         CTCTGCGAGATCTTGAGTCGCCGATTAGAAAAGATGAG
genomic: GGGTTTTCGCTTGAGgtatttttcc ... ttgtttacagCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG
EST: gi|209701422|gb|BW667323.1|BW667323
EST:     AACTAGGGTTTTCGCTTGAG                         CTCTGCGAGATCTTGAGTCGCCGATTAGAAAAGATGAG
genomic: AACTAGGGTTTTCGCTTGAGgtatttttcc ... ttgtttacagCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG
EST: gi|298177490|gb|HO023623.1|HO023623
EST:     AACTAGGG-TTTCGCTTGAG                         CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG
genomic: AACTAGGGTTTTCGCTTGAGgtatttttcc ... ttgtttacagCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG
EST: gi|207801492|gb|GD773870.1|GD773870
EST:     AGGGTTTTCGCTTGAG                         CTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG
genomic: AGGGTTTTCGCTTGAGgtatttttcc ... ttgtttacagCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcggccgataacaattttctgttttgtgtgatttttttgttctttgtttacagCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG
       cgataac  putative branch site (score: 3)
                                 tttttttgttctttgt  putative PPT
                                atttttttgttcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatttttcctaccctgaacatctgccatttgggttttatccctcccttgttctgcactgcggccgataacaattttctgttttgtgtgatttttttgttctttgtttacagCTCTGCGAGATCTTGAGTCGCCGATTTGAAAAGATGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG