Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcatcataaattatatatgctcttcattttgattttgattatattattggtccatttaggatctctaatcatacttagtgttattgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAATTGTCGTTGACCAGGGCGCTGTTCTACATGGTGATGCAGGTTCTGGGTGC

Basic information

species Glycine max
transcript GLYMA11G35030.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8827078|gb|BE210808.1|BE210808
EST:     CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
genomic: CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
EST: gi|254315524|gb|GR825333.1|GR825333
EST:     CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
genomic: CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
EST: gi|4291483|gb|AI441768.1|AI441768
EST:     CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAAGAAAT
genomic: CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
EST: gi|209703049|gb|BW656082.1|BW656082
EST:     CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
genomic: CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
EST: gi|4395738|gb|AI494735.1|AI494735
EST:     CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GGGGACACCATAAACCCG-CTGTGACATTCGGATTGT-CTTGGCGAGGAAA
genomic: CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACAC-ATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAA
EST: gi|9898746|gb|BE607714.1|BE607714
EST:     CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
genomic: CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
EST: gi|4313534|gb|AI460653.1|AI460653
EST:     TTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
genomic: TTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
EST: gi|4397323|gb|AI496320.1|AI496320
EST:     CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
genomic: CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
EST: gi|213619856|gb|DB969520.1|DB969520
EST:     CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GNGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
genomic: CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
EST: gi|151407326|gb|EV277141.1|EV277141
EST:     CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
genomic: CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
EST: gi|7588404|gb|AW704200.1|AW704200
EST:     CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
genomic: CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
EST: gi|12774124|gb|BG239051.1|BG239051
EST:     CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GGGGACACATAAACCCGGCTGTGACATTCGGATTGTT-TTGGCGAGGAAAT
genomic: CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
EST: gi|8826519|gb|BE210249.1|BE210249
EST:     CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
genomic: CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
EST: gi|4293184|gb|AI437869.1|AI437869
EST:     CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
genomic: CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
EST: gi|209715213|gb|BW668541.1|BW668541
EST:     CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
genomic: CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
EST: gi|14125559|gb|BG789997.1|BG789997
EST:     CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
genomic: CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attatattattggtccatttaggatctctaatcatacttagtgttattgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAATTGTCGTTGACCAGGGCGCTGTTCTACATGGTGATGCAGGTTCTGGGTGC
                                            tattgat  putative branch site (score: 3)
                                           ttattgatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatcatcataaattatatatgctcttcattttgattttgattatattattggtccatttaggatctctaatcatacttagtgttattgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAATTGTCGTTGACCAGGGCGCTGTTCTACATGGTGATGCAGGTTCTGGGTGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT