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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atccatttccccctctttgtatcctattgagcttcatacccaagcatttatctgttattgatttcttgtctactgactatgattttatttgatatttcagAATATTGAAAGGTTTTAGTTGTTGATTTGGATCAAGTCTCTAGTCAACCTTTGAAATTCTTATTCCAGTTTTCAAATATATAGAGCCATGAGTTTTGTTT

Basic information

species Glycine max
transcript GLYMA11G34130.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120493394|gb|EH221561.1|EH221561
EST:     TCACAACCTCAATCGTATTAAGCTGTTGTTGTTCCTCGTCGTCAATTTCG                         AATATTGAAAGGTTTTAGTTGTTGATTTGGATCAAGTCTCTAGTCAACCTT
genomic: TCACAACCTCAATCGTATTAAGCTGTTGTTGTTCCTCGTCGTCAATTTCGgtaactccct ... gatatttcagAATATTGAAAGGTTTTAGTTGTTGATTTGGATCAAGTCTCTAGTCAACCTT
EST: gi|151399017|gb|EV268888.1|EV268888
EST:     TCACAACCTCAATCGTATTAAGCTGTTGTTGTTCCTCGTCGTCAATTTCG                         AATATTGAAAGGTTTTAGTTGTTGATTTGGATCAAGTCTCTAGTCAACCTT
genomic: TCACAACCTCAATCGTATTAAGCTGTTGTTGTTCCTCGTCGTCAATTTCGgtaactccct ... gatatttcagAATATTGAAAGGTTTTAGTTGTTGATTTGGATCAAGTCTCTAGTCAACCTT
EST: gi|192299785|gb|FG987801.1|FG987801
EST:     TCACAACCTCAATCGTATTAAGCTGTTGTTGTTCCTCGTCGTCAATTTCG                         AATATTGAAAGGTTTTAGTTGTTGATTTGGATCAAGTCTCTAGTCAACCTT
genomic: TCACAACCTCAATCGTATTAAGCTGTTGTTGTTCCTCGTCGTCAATTTCGgtaactccct ... gatatttcagAATATTGAAAGGTTTTAGTTGTTGATTTGGATCAAGTCTCTAGTCAACCTT
EST: gi|151409236|gb|EV279044.1|EV279044
EST:     TCACAACCTCAATCGTATTAAGCTGTTGTTGTTCCTCGTCGTCAATTTCG                         AATATTGAAAGGTTTTAGTTGTTGATTTGGATCAAGTCTCTAGTCAGCCTT
genomic: TCACAACCTCAATCGTATTAAGCTGTTGTTGTTCCTCGTCGTCAATTTCGgtaactccct ... gatatttcagAATATTGAAAGGTTTTAGTTGTTGATTTGGATCAAGTCTCTAGTCAACCTT
EST: gi|9899003|gb|BE607971.1|BE607971
EST:     TCACAACCTCAATCGTATTAAGCTGTTGTTGTTCCTCGTCGTCAATTTCG                         AATATTGAAAGGTTTTAGTTGTTGATTTGGATCAAGTCTCTAGTCAACCTT
genomic: TCACAACCTCAATCGTATTAAGCTGTTGTTGTTCCTCGTCGTCAATTTCGgtaactccct ... gatatttcagAATATTGAAAGGTTTTAGTTGTTGATTTGGATCAAGTCTCTAGTCAACCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttatctgttattgatttcttgtctactgactatgattttatttgatatttcagAATATTGAAAGGTTTTAGTTGTTGATTTGGATCAAGTCTCTAGTCAACCTTTGAAATTCTTATTCCAGTTTTCAAATATATAGAGCCATGAGTTTTGTTT
                              actatgattttatttg  TA-rich tract