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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtttttctttttcccctccttttaaattccggtttaaatattattttttgagccgaaattaatgaaattcttccctctgttgcagCATGAAATCGTACCCACTGAACTCATAGACCGAATTGCGCGTCTCAA

Basic information

species Glycine max
transcript GLYMA11G33320.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7588583|gb|AW704375.1|AW704375
EST:     CCAAAGATGATTTTAGGGTTCTCACTGCTGTTGAATTGGGCATGCGGAAT                         CATGAAATCGTACCCACTGAACTCATAGACCGAATTGCGCGTCTCAA
genomic: CCAAAGATGATTTTAGGGTTCTCACTGCTGTTGAATTGGGCATGCGGAATgtgcgttttt ... tctgttgcagCATGAAATCGTACCCACTGAACTCATAGACCGAATTGCGCGTCTCAA
EST: gi|14260014|gb|BG882922.1|BG882922
EST:     CCAAAGATGATTTTAGGGTTCTCACTGCTGTTGAATTGGGCATGCGGAAT                         CATGAAATCGTACCCACTGAACTCATAGACCGAATTGCGCGTCTCAA
genomic: CCAAAGATGATTTTAGGGTTCTCACTGCTGTTGAATTGGGCATGCGGAATgtgcgttttt ... tctgttgcagCATGAAATCGTACCCACTGAACTCATAGACCGAATTGCGCGTCTCAA
EST: gi|6501956|gb|AW203329.1|AW203329
EST:     CCAAAGATGATTTTAGGGTTCTCACTGCTGTTGAATTGGGCATGCGGAAT                         CATGAAATCGTACCCACTGAACTCATAGACCGAATTGCGCGTCTCAA
genomic: CCAAAGATGATTTTAGGGTTCTCACTGCTGTTGAATTGGGCATGCGGAATgtgcgttttt ... tctgttgcagCATGAAATCGTACCCACTGAACTCATAGACCGAATTGCGCGTCTCAA
EST: gi|4293428|gb|AI442046.1|AI442046
EST:     CCAAAGATGATTTTAGGGTTCTCACTGCTGTTGAATTGGGCATGCGGAAT                         CATGAAATCGTACCCACTGAACTCATAGACCGAATTGCGCGTCTCAA
genomic: CCAAAGATGATTTTAGGGTTCTCACTGCTGTTGAATTGGGCATGCGGAATgtgcgttttt ... tctgttgcagCATGAAATCGTACCCACTGAACTCATAGACCGAATTGCGCGTCTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtttaaatattattttttgagccgaaattaatgaaattcttccctctgttgcagCATGAAATCGTACCCACTGAACTCATAGACCGAATTGCGCGTCTCAA
                          aattaat  putative branch site (score: 3)
                                     ttcttccctctgttgc  putative PPT
     aaatattattttttga  TA-rich tract