1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttgagtggggattccacccttctttatttgtttgtttcaataggggttcatttattgttgatgggcactcatgcattatgtgtttttttttttaatgcagTTTGGTACTTTCAACTAGTTGATTGGATGGGATTTGCTTTCTCTTTTGGTTCCTTGGCTGGTTTGGTTTCCTCTTCTGACTTTGCTACCCCAAATAAAGA
species | Glycine max |
transcript | GLYMA11G31750.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTCCCTACCCTTCCATGATTGTTGGTCTCTTTCAGTGCCTCAGCCTCAG TTTGGTACTTTCAACTAGTTGATTGGATGGGATTTGCTTTCTCTTTTGGTTEST: gi|192314283|gb|FK007021.1|FK007021
genomic: GCTCCCTACCCTTCCATGATTGTTGGTCTCTTTCAGTGCCTCAGCCTCAGgtctgattct ... tttaatgcagTTTGGTACTTTCAACTAGTTGATTGGATGGGATTTGCTTTCTCTTTTGGTT
EST: GCTCCCTACCCTTCCATGATTGTTGGTCTCTTTCAGTGCCTCAGCCTCAG TTTGGTACTTTCAACTAGTTGATTGGATGGGATTTGCTTTCTCTTTTGGTT
genomic: GCTCCCTACCCTTCCATGATTGTTGGTCTCTTTCAGTGCCTCAGCCTCAGgtctgattct ... tttaatgcagTTTGGTACTTTCAACTAGTTGATTGGATGGGATTTGCTTTCTCTTTTGGTT
gttcatttattgttgatgggcactcatgcattatgtgtttttttttttaatgcagTTTGGTACTTTCAACTAGTTGATTGGATGGGATTTGCTTTCTCTTTTGGTTCCTTGGCTGGTTTGGTTTCCTCTTCTGACTTTGCTACCCCAAATAAAGA
ttttaat putative branch site (score: 3)
tgtgttttttttttt CT-rich tract
attatgtgtttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgagtggggattccacccttctttatttgtttgtttcaataggggttcatttattgttgatgggcactcatgcattatgtgtttttttttttaatgcagTTTGGTACTTTCAACTAGTTGATTGGATGGGATTTGCTTTCTCTTTTGGTTCCTTGGCTGGTTTGGTTTCCTCTTCTGACTTTGCTACCCCAAATAAAGA
- gagtggg
- - - - - -ttccacc
- - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgca