1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aattactggcatgttattatgtagtataatttatccccttttctttgagtttaattgttgcatgtccttatccccctttgatgtatttgatcttttttagGACATTGGAGGATGTGATATCCAGAAACAGGAAATCCGTGAGGCTGTGGAGCTACCCCTTACACATCATGAACTATACAAACAAATTGGTATTGATCCTC
species | Glycine max |
transcript | GLYMA11G31470.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCAGCATCTCGCTCCTCAGCCAGTCCGAGAAGCCTGACGTCACTTATAAT GACATTGGAGGATGTGATATCCAGAAACAGGAAATCCGTGAGGCTGTGGAGEST: gi|254324497|gb|GR833922.1|GR833922
genomic: CCAGCATCTCGCTCCTCAGCCAGTCCGAGAAGCCTGACGTCACTTATAATgtcggtttcg ... tcttttttagGACATTGGAGGATGTGATATCCAGAAACAGGAAATCCGTGAGGCTGTGGAG
EST: CCAGCATCTCGCTCCTCAGCCAGTCCGAGAAGCCTGACGTCACTTATAAT GACATTGGAGGATGTGATATCCAGAAACAGGAAATCCGTGAGGCTGTGGAGEST: gi|298195266|gb|HO043794.1|HO043794
genomic: CCAGCATCTCGCTCCTCAGCCAGTCCGAGAAGCCTGACGTCACTTATAATgtcggtttcg ... tcttttttagGACATTGGAGGATGTGATATCCAGAAACAGGAAATCCGTGAGGCTGTGGAG
EST: CCAGCATCTCGCTCCTCAGCCAGTCCGAGAAGCCTGACGTCACTTATAAT GACATTGGAGGTTGTGATATCCAGAAACAGGAAATCCGTGAGGCTGTGGAG
genomic: CCAGCATCTCGCTCCTCAGCCAGTCCGAGAAGCCTGACGTCACTTATAATgtcggtttcg ... tcttttttagGACATTGGAGGATGTGATATCCAGAAACAGGAAATCCGTGAGGCTGTGGAG
tgagtttaattgttgcatgtccttatccccctttgatgtatttgatcttttttagGACATTGGAGGATGTGATATCCAGAAACAGGAAATCCGTGAGGCTGTGGAGCTACCCCTTACACATCATGAACTATACAAACAAATTGGTATTGATCCTC
tctttttt CT-rich tract
tatttgatctttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattactggcatgttattatgtagtataatttatccccttttctttgagtttaattgttgcatgtccttatccccctttgatgtatttgatcttttttagGACATTGGAGGATGTGATATCCAGAAACAGGAAATCCGTGAGGCTGTGGAGCTACCCCTTACACATCATGAACTATACAAACAAATTGGTATTGATCCTC
- - - - gcatgtt
- - - - - - - - -tatgtag
- - - - - - - - - - - - - - - - -tcccctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgca