Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209707964|gb|BW657046.1|BW657046EST: GCGTCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCATCGAG TTTGTAGTCATGTTCCTAGCCGTCATTCGGGCTCGAGCCACAGCCGCGCCG
genomic: GCGTCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCATCGAGgttcgatcac ... ttgatttcagTTTGTAGTCATGTTCCTAGCCGTCATTCGGGCTCGAGCCACAGCCGCGCCG
EST:
gi|7283384|gb|AW595993.1|AW595993EST: GCGTCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCATCGAG TTTGTAGTCATGTTCCTAGCCGTCATTCGGGCTCGAGCCACAGCCGCGCCG
genomic: GCGTCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCATCGAGgttcgatcac ... ttgatttcagTTTGTAGTCATGTTCCTAGCCGTCATTCGGGCTCGAGCCACAGCCGCGCCG
EST:
gi|209719642|gb|BW651042.1|BW651042EST: GCGTCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCATCGAG TTTGTAGTCATGTTCCTAGCCGTCATTCGGGCTCGAGCCACAGCCGCGCCG
genomic: GCGTCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCATCGAGgttcgatcac ... ttgatttcagTTTGTAGTCATGTTCCTAGCCGTCATTCGGGCTCGAGCCACAGCCGCGCCG
EST:
gi|37996963|gb|CF808552.1|CF808552EST: GCGTCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCATCGAG TTTGTAGTCATGTTCCTAGCCGTCATTCGGGCTCGAGCCACAGCCGCGCCG
genomic: GCGTCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCATCGAGgttcgatcac ... ttgatttcagTTTGTAGTCATGTTCCTAGCCGTCATTCGGGCTCGAGCCACAGCCGCGCCG
EST:
gi|14125913|gb|BG790351.1|BG790351EST: GCGTCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCATCGAG TTTGTAGTCATGTTCCTAGCCGTCATTCGGGCTCGAGCCACAGCCGCGCCG
genomic: GCGTCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCATCGAGgttcgatcac ... ttgatttcagTTTGTAGTCATGTTCCTAGCCGTCATTCGGGCTCGAGCCACAGCCGCGCCG
EST:
gi|209713576|gb|BW679326.1|BW679326EST: GCGTCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCATCGAG TTTGTAGTCATGTTCCTAGCCGTCATTCGGGCTCGAGCCACAGCCGCGCCG
genomic: GCGTCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCATCGAGgttcgatcac ... ttgatttcagTTTGTAGTCATGTTCCTAGCCGTCATTCGGGCTCGAGCCACAGCCGCGCCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaacaacgtaggaaagttataacattataactttgtattttctgtttgatttcagTTTGTAGTCATGTTCCTAGCCGTCATTCGGGCTCGAGCCACAGCCGCGCCGTTAAACTCGGCTTACACAGCGGAAGAGTTCGAGTTTTACTTATCCGACT
ttttctgttt CT-rich tract
aaagttataacattat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttcgatcactctcccaacaaagccaacatttatcaataataataataaaaaagacaaacaacgtaggaaagttataacattataactttgtattttctgtttgatttcagTTTGTAGTCATGTTCCTAGCCGTCATTCGGGCTCGAGCCACAGCCGCGCCGTTAAACTCGGCTTACACAGCGGAAGAGTTCGAGTTTTACTTATCCGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA