1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tctcccttcaccacttcacatttcacttggttattatgcatgattgttcattcatctgttctgtcatggtgaattctaatttgattgatgcattgaacagTGGTCATGGAAGTTTTTCCAACAGTCCTATGTTGAACAGCATTGTGGGCCACATCTTGCACTCTTCAATCCTTGTACCATACCATGGATG
species | Glycine max |
transcript | GLYMA11G27190.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTG TGGTCATGGAAGTTTTTCCAACAGTCCTATGTTGAACAGCATTGTGGGCCAEST: gi|192308420|gb|FK000916.1|FK000916
genomic: TCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTGgtaactaatt ... cattgaacagTGGTCATGGAAGTTTTTCCAACAGTCCTATGTTGAACAGCATTGTGGGCCA
EST: TCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTG TGGTCATGGAAGTTTTTCCAACAGTCCTATGTTGAACAGCATTGTGGGCCAEST: gi|7286123|gb|AW598610.1|AW598610
genomic: TCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTGgtaactaatt ... cattgaacagTGGTCATGGAAGTTTTTCCAACAGTCCTATGTTGAACAGCATTGTGGGCCA
EST: TCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTG TGGTCATGGAAGTTTTTCCAACAGTCCTATGTTGAACAGCATTGTGGGCCA
genomic: TCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTGgtaactaatt ... cattgaacagTGGTCATGGAAGTTTTTCCAACAGTCCTATGTTGAACAGCATTGTGGGCCA
gttcattcatctgttctgtcatggtgaattctaatttgattgatgcattgaacagTGGTCATGGAAGTTTTTCCAACAGTCCTATGTTGAACAGCATTGTGGGCCACATCTTGCACTCTTCAATCCTTGTACCATACCATGGATG
aattctaatttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctcccttcaccacttcacatttcacttggttattatgcatgattgttcattcatctgttctgtcatggtgaattctaatttgattgatgcattgaacagTGGTCATGGAAGTTTTTCCAACAGTCCTATGTTGAACAGCATTGTGGGCCACATCTTGCACTCTTCAATCCTTGTACCATACCATGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
-ctccctt
- - - - - ccacttc
- - - - - - - - - - - -cacttgg
- - - - - - - - - - - - - - - - - - -gcatgat
- - - - - - - - - - - - - - - - - - - - - - - -tcattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaattc