1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaattttttttctataaaaacatggacttagattgctatttgatcaaagaaattaatcatataactatgtggtttctttggtcttttatgttacattacttgaaggggcaatttggttttgcctaatttgaaatctaattcatttttggtatgttttgtaattacagTTACTGCTGTGGATTCTGGTAGTAAGGCTTTGAAGTTTCTTGGTTTGGTTGAAGAGAAGAGAAATGAGGAGCCTCCTCCCTGTATTGCTCTAGAATCCCA
species | Glycine max |
transcript | GLYMA11G21650.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TATTGACAGAATGCTGATTGAGAGGCTCCTCAAAACCTCTTCCTTTCATG TTACTGCTGTGGATTCTGGTAGTAAGGCTTTGAAGTTTCTTGGTTTGGTTGEST: gi|192334799|gb|FK025948.1|FK025948
genomic: TATTGACAGAATGCTGATTGAGAGGCTCCTCAAAACCTCTTCCTTTCATGgtaatttttt ... gtaattacagTTACTGCTGTGGATTCTGGTAGTAAGGCTTTGAAGTTTCTTGGTTTGGTTG
EST: TATTGACAGAATGCTGACTGAGAGGCTCCTCAAAACCTCTTCCTTTCATG TTACTGCTGTGGATTCTGGTAGTAAGGCTTTGAAGTTTCTTGGTTTGGTTGEST: gi|7283519|gb|AW596125.1|AW596125
genomic: TATTGACAGAATGCTGATTGAGAGGCTCCTCAAAACCTCTTCCTTTCATGgtaatttttt ... gtaattacagTTACTGCTGTGGATTCTGGTAGTAAGGCTTTGAAGTTTCTTGGTTTGGTTG
EST: TATTGACAGAATGCTGATTGAGAGGCTCCTCAAAACCTCTTCCTTTCATG TTACTGCTGTGGATTCTGGTAGTAAGGCTTTGAAGTTTCTTGGTTTGGTTGEST: gi|7795492|gb|AW780889.1|AW780889
genomic: TATTGACAGAATGCTGATTGAGAGGCTCCTCAAAACCTCTTCCTTTCATGgtaatttttt ... gtaattacagTTACTGCTGTGGATTCTGGTAGTAAGGCTTTGAAGTTTCTTGGTTTGGTTG
EST: TATTGACAGAATGCTGATTGAGAGGCTCCTCAAAACCTCTTCCTTTCATG TTACTGCTGTGGATTCTGGTAGTAAGGCTTTGAAGTTTCTTGGTTTGGTTGEST: gi|192334800|gb|FK025949.1|FK025949
genomic: TATTGACAGAATGCTGATTGAGAGGCTCCTCAAAACCTCTTCCTTTCATGgtaatttttt ... gtaattacagTTACTGCTGTGGATTCTGGTAGTAAGGCTTTGAAGTTTCTTGGTTTGGTTG
EST: AAAACCTCTTCCTTTCATG TTACTGCTGTGGATTCTGGTAGTAAGGCTTTGAAGTTTCTTGGTTTGGTTG
genomic: AAAACCTCTTCCTTTCATGgtaatttttt ... gtaattacagTTACTGCTGTGGATTCTGGTAGTAAGGCTTTGAAGTTTCTTGGTTTGGTTG
ttggttttgcctaatttgaaatctaattcatttttggtatgttttgtaattacagTTACTGCTGTGGATTCTGGTAGTAAGGCTTTGAAGTTTCTTGGTTTGGTTGAAGAGAAGAGAAATGAGGAGCCTCCTCCCTGTATTGCTCTAGAATCCCA
atctaat putative branch site (score: 3)
taatttgaaatctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattttttttctataaaaacatggacttagattgctatttgatcaaagaaattaatcatataactatgtggtttctttggtcttttatgttacattacttgaaggggcaatttggttttgcctaatttgaaatctaattcatttttggtatgttttgtaattacagTTACTGCTGTGGATTCTGGTAGTAAGGCTTTGAAGTTTCTTGGTTTGGTTGAAGAGAAGAGAAATGAGGAGCCTCCTCCCTGTATTGCTCTAGAATCCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC