Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgatcattgaaatgaacttttagattcacgtatttgctttgaaatgttgattagtggcactgctttttgataagcacatcaatatttggtgacttgcagTTTTCAGGACTGGTGCTGTGAATGCTGCATCTGGATCTGCTTACGCTGAGTTTGGAAATACCAAGGTCATTGTATCAGT

Basic information

species Glycine max
transcript GLYMA11G20420.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G20420.1 (Glycine max), 3'ss of exon 1
lower sequence: AT4G27490.1 (Arabidopsis thaliana), 3'ss of exon 2
------------------------------------------ttgatcattg-aaatgaacttttagattcacgtatttgctttgaaatgtt-gattag--tggcactgctttttgataagcacatcaatatttggtgacttgcagTTTTCAGGACTGGTGCTGTGAATGCTGCATCTGGATCTGCTTACGCTGAGTTTGGAAATACCAAGGTCATTGTATCAGT
                                          ||  ||||||  ||   ||  || ||||||  |   | |  | |  |||  || ||   | |   ||  ||||| |       | || | |  |   ||| ||||  |    ||||||||||||| | |||| ||||| |||||||| ||||||||||| || || || || ||||| |||||
gtaaaaacacctttgattcctctaaattcttaatcgttagggttcttcattgtgaaattacggttggattcatatgactccagttatttgtgagactaaactagatttgaattttgtttcttttgtgaaaaat--gcttctttcagTACTTCAAACTGGTGCTGTGAGTTCTGCTTCTGGTTCTGCTTATGCTGAGTTTGGGAACACTAAAGTTATTGTTTCAGT

upper sequence: GLYMA11G20420.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv06s0004g02660.t01 (Vitis vinifera), 3'ss of exon 1
ttgatcattgaaatgaacttttagattcacgt--atttgct-ttgaaatgttgattagtggcactgcttt--ttgataagcacatcaatatttggtgacttgcagTTTTCAGGACTGGTGCTGTGAATGCTGCATCTGGATCTGCTTACGCTGAGTTTGGAAATACCAAGGTCATTGTATCAGT
       |  | |||  | ||| | || ||    |||||   ||| | | | || |      |    ||   ||||  |    || | |  |||||| ||||||||| | | |||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| || ||
-----tgtgcatatgtgcattttgctttactatgatttgtaattgcattatagagtgcaattatgatttgcattgaagaaacgataagttgttggtggcttgcagTTCTGAAGACTGGTGCTGTGAATGCTGCATCAGGATCTGCTTATGCAGAGTTTGGAAATACCAAGGTCATTGTGTCTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298176888|gb|HO026895.1|HO026895
EST:     GGATTGGGTTCGACCCGATGGCCGCGGTTTTCACCAGTGCAGACCCGCGT                         TTTTCAGGACTGGTGCTGTGAATGCTGCATCTGGATCTGCTTACGCTGAGT
genomic: GGATTGGGTTCGACCCGATGGCCGCGGTTTTCACCAGTGCAGACCCGCGTgtaagccccc ... tgacttgcagTTTTCAGGACTGGTGCTGTGAATGCTGCATCTGGATCTGCTTACGCTGAGT
EST: gi|192299065|gb|FG990393.1|FG990393
EST:     GGATTGGGTTCGACCCGATGGCCGCGGTTTTCACCAGTGCAGACCCGCGT                         TTTTCAGGACTGGTGCTGTGAATGCTGCATCTGGATCTGCTTACGCTGAGT
genomic: GGATTGGGTTCGACCCGATGGCCGCGGTTTTCACCAGTGCAGACCCGCGTgtaagccccc ... tgacttgcagTTTTCAGGACTGGTGCTGTGAATGCTGCATCTGGATCTGCTTACGCTGAGT
EST: gi|192302684|gb|FG993704.1|FG993704
EST:     GGATTGGGTTCGACCCGATGGCCGCGGTTTTCACCAGTGCAGACCCGCGT                         TTTTCAGGACTGGTGCTGTGAATGCTGCATCTGGATCTGCTTACGCTGAGT
genomic: GGATTGGGTTCGACCCGATGGCCGCGGTTTTCACCAGTGCAGACCCGCGTgtaagccccc ... tgacttgcagTTTTCAGGACTGGTGCTGTGAATGCTGCATCTGGATCTGCTTACGCTGAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgattagtggcactgctttttgataagcacatcaatatttggtgacttgcagTTTTCAGGACTGGTGCTGTGAATGCTGCATCTGGATCTGCTTACGCTGAGTTTGGAAATACCAAGGTCATTGTATCAGT
                    ttttgat  putative branch site (score: 4)
                   tttttgataa  TA-rich tract