1 5' 3' | 2 5' 3' | 3 5' 3' |
...aaaacttgaactcgagaggaatgtcagttgatacatgcactccgggatattttatattttttattgatgattttgttttttgttttttgtttactgttagAATCTTTGAAGAAGTTGAAGGTGTTTGTCTACGACCTTCCTCCGAAGTACAACACGGATTGGTTGACGAACGAGAGGTGCAGCAAACATTTGTTTGCGTC
species | Glycine max |
transcript | GLYMA11G19910.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CATCCAATCAAACCACACCACAACTCCTCAACATGCTCTTAACTCTCCAG AATCTTTGAAGAAGTTGAAGGTGTTTGTCTACGACCTTCCTCCGAAGTACAEST: gi|254322354|gb|GR837768.1|GR837768
genomic: CATCCAATCAAACCACACCACAACTCCTCAACATGCTCTTAACTCTCCAGgtacctataa ... ttactgttagAATCTTTGAAGAAGTTGAAGGTGTTTGTCTACGACCTTCCTCCGAAGTACA
EST: CATCCAATCAAACCACACCACAACTCCTCAACATGCTCTTAACTCTCCAG AATCTTTGAAGAAGTTGAAGGTGTTTGTCTACGACCTTCCTCCGAAGTACAEST: gi|208221097|gb|GE020767.1|GE020767
genomic: CATCCAATCAAACCACACCACAACTCCTCAACATGCTCTTAACTCTCCAGgtacctataa ... ttactgttagAATCTTTGAAGAAGTTGAAGGTGTTTGTCTACGACCTTCCTCCGAAGTACA
EST: CCAATCAAACCACACCACAACTCCTCAACATGCTCTTAACTCTCCAG AATCTTTGAAGAAGTTGAAGGNGTTTGTCTACGACCTTCCTCCGAAGTACAEST: gi|9440092|gb|BE440603.1|BE440603
genomic: CCAATCAAACCACACCACAACTCCTCAACATGCTCTTAACTCTCCAGgtacctataa ... ttactgttagAATCTTTGAAGAAGTTGAAGGTGTTTGTCTACGACCTTCCTCCGAAGTACA
EST: ATCCAATCAAACCACACCACAACTCCTCAACATGCTCTTAACTCTCCAG AATCTTTGAAGAAGTTGAAGGTGTTTGTCTACGACCTTCCTCCGAAGTACA
genomic: ATCCAATCAAACCACACCACAACTCCTCAACATGCTCTTAACTCTCCAGgtacctataa ... ttactgttagAATCTTTGAAGAAGTTGAAGGTGTTTGTCTACGACCTTCCTCCGAAGTACA
gatattttatattttttattgatgattttgttttttgttttttgtttactgttagAATCTTTGAAGAAGTTGAAGGTGTTTGTCTACGACCTTCCTCCGAAGTACAACACGGATTGGTTGACGAACGAGAGGTGCAGCAAACATTTGTTTGCGTC
tattgat putative branch site (score: 3)
ttttgttttttgtttt putative PPT
tttatattttttattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaacttgaactcgagaggaatgtcagttgatacatgcactccgggatattttatattttttattgatgattttgttttttgttttttgtttactgttagAATCTTTGAAGAAGTTGAAGGTGTTTGTCTACGACCTTCCTCCGAAGTACAACACGGATTGGTTGACGAACGAGAGGTGCAGCAAACATTTGTTTGCGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - cttgaac
- - - - - - - - -ggaatgt
- - - - - - - - - - - - - - - - -catgcac