1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttacaaagttttgtgcctttctggatttatttgcgctttaaaattggtgcttatgttataatgtattcatctgggttggttattttttttttggattcagGTGTACAAGGTGTCGATTGGAGCAGCTTGTAATCTTTCATGGCCTGCGGATCGTCTCGTCATCCAAGTGCTTGATGATTCTACTGACCCTACCGTCAAG
species | Glycine max |
transcript | GLYMA11G19490.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTAATTACCCCGTCGTGCTTGTCCAGATTCCAATGTTCAATGAGAAAGAG GTGTACAAGGTGTCGATTGGAGCAGCTTGTAATCTTTCATGGCCTGCGGATEST: gi|7639921|gb|AW734233.1|AW734233
genomic: CTAATTACCCCGTCGTGCTTGTCCAGATTCCAATGTTCAATGAGAAAGAGgtcagaaatc ... ttggattcagGTGTACAAGGTGTCGATTGGAGCAGCTTGTAATCTTTCATGGCCTGCGGAT
EST: CTAATTACCCCGTCGTGCTTGTCCAGATTCCAATGTTCAATGAGAAAGAG GTGTACAAGGTGTCGATTGGAGCAGCTTGTAATCTTTCATGGCCTGCGGATEST: gi|8282828|gb|BE020389.1|BE020389
genomic: CTAATTACCCCGTCGTGCTTGTCCAGATTCCAATGTTCAATGAGAAAGAGgtcagaaatc ... ttggattcagGTGTACAAGGTGTCGATTGGAGCAGCTTGTAATCTTTCATGGCCTGCGGAT
EST: CTAATTACCCCGTCGTGCTTGTCCAGATTCCAATGTTCAATGAGAAAGAG GTGTACAAGGTGTCGATTGGAGCAGCTTGTAATCTTTCATGGCCTGCGGATEST: gi|14999810|gb|BI320624.1|BI320624
genomic: CTAATTACCCCGTCGTGCTTGTCCAGATTCCAATGTTCAATGAGAAAGAGgtcagaaatc ... ttggattcagGTGTACAAGGTGTCGATTGGAGCAGCTTGTAATCTTTCATGGCCTGCGGAT
EST: CTAATTACCCCGTCGTGCTTGTCCAGATTCCAATGTTCAATGAGAAAGAG GTGTACAAGGTGTCGATTGGAGCAGCTTGTAATCTTTCATGGCCTGCGGAT
genomic: CTAATTACCCCGTCGTGCTTGTCCAGATTCCAATGTTCAATGAGAAAGAGgtcagaaatc ... ttggattcagGTGTACAAGGTGTCGATTGGAGCAGCTTGTAATCTTTCATGGCCTGCGGAT
ggtgcttatgttataatgtattcatctgggttggttattttttttttggattcagGTGTACAAGGTGTCGATTGGAGCAGCTTGTAATCTTTCATGGCCTGCGGATCGTCTCGTCATCCAAGTGCTTGATGATTCTACTGACCCTACCGTCAAG
ttatttttttttt CT-rich tract
ttattttttttttgga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacaaagttttgtgcctttctggatttatttgcgctttaaaattggtgcttatgttataatgtattcatctgggttggttattttttttttggattcagGTGTACAAGGTGTCGATTGGAGCAGCTTGTAATCTTTCATGGCCTGCGGATCGTCTCGTCATCCAAGTGCTTGATGATTCTACTGACCCTACCGTCAAG
- - - - -tttgtgc
- - - - - - - - ctttctg
- - - - - - - - - - - - - - - - - - - - - - tggtgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggttgg