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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgaatttttggagtttcgattttgaatgatttggtattttgattcaaattatggttgaagttgaaaatgtgttttcaattttcacgtgttactgtgtagTTCCTATTGGCGTGTACGGAATTCAGCACTACTTTTCGATATTAGGTTCGTTGATTCTGATTCCGCTTGTGATTGTTCCTGCCATGGGAGGCACTCAC

Basic information

species Glycine max
transcript GLYMA11G19420.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G19420.1 (Glycine max), 3'ss of exon 1
lower sequence: AT2G27810.3 (Arabidopsis thaliana), 3'ss of exon 1
gtattgaatttttggagtttcgattttgaatgatttggtattttgattcaaattatggttgaagttgaaaatgtgttttcaattttcacgtgttactgtgtagTTCCTATTGGCGTGTACGGAATTCAGCACTACTTTTCGATATTAGGTTCGTTGATTCTGATTCCGCTTGTGATTGTTCCTGCCATGGGAGGCACTCAC
 | | || ||  ||     | |    |||||  |||   | |||  ||    ||||  |||  |||       || ||    | |     |||   | |  |||||| |||||  | || ||  | ||||| ||| |||| || || || || ||||||||| |||| ||||| ||||||||||| ||||||||  | || 
ttgtggatttcatgtcagatagtgactgaatctttttaaagtttctttttt-ttatttttggtgtttggttaatgattgttgtgtgtgtttgtg--ttttcagTTCCAATTGGGTTCTATGGTTTGCAGCATTACCTTTCAATGTTGGGATCATTGATTCTGGTTCCACTTGTTATTGTTCCTGCAATGGGAGGTTCACAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaattatggttgaagttgaaaatgtgttttcaattttcacgtgttactgtgtagTTCCTATTGGCGTGTACGGAATTCAGCACTACTTTTCGATATTAGGTTCGTTGATTCTGATTCCGCTTGTGATTGTTCCTGCCATGGGAGGCACTCAC
                           ttttcaatttt  TA-rich tract