Sequence
atgc intronic sequence ATGC exonic sequence...ttgaattttaaatttcttctctgacaaattaatatattcttattgattattgagggtgtttttataaatggattttgcttaaaatggtttcaactttcagGTCATTGCTGTAGGTTATGCTATTATGACAACAAGATCAATGGATATGAATTGGAAAATGAGGGCAATCCGAGTTTTGCCAATGTTTCTTTTGCCTGCCT
Basic information
| species | Glycine max |
| transcript | GLYMA11G18060.1 |
| intron # | 1 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G29620.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv02s0033g01150.t01 (Vitis vinifera), 3'ss of exon 3
ttgaattttaaatttcttctctgacaaattaatatattcttattgattattgagggtgtttttataaat---ggattttgcttaaaatggtttcaactttcagGTCATTGCTGTAGGTTATGCTATTATGACAACAAGATCAATGGATATGAATTGGAAAATGAGGGCAATCCGAGTTTTGCCAATGTTTCTTTTGCCTGCCT
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-ttaattgagcattaaatctatgaatacacaattctttctaacttgatgt--aggctacttctgaagtttctggcattctcttgagttaacttcaattttcagGTTATTGCAGTGGGTTATGCTATCATGACAACAAGATCCGTAGATCTGAACTGGAAGATGAGGGCTTTTCGTGTTCTGCCAATGTTTCTGTTGCCTGGTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208207620|gb|GE006239.1|GE006239EST: ATTCTATTCTCTGTTTTATTTGAG GTCATTGCTGTAGGATATGCTATTATGACAACAAGATCAATGGATATGAAT
genomic: ATTCTATTCTCTGTTTTATTTGAGgtaactacat ... caactttcagGTCATTGCTGTAGGTTATGCTATTATGACAACAAGATCAATGGATATGAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attattgagggtgtttttataaatggattttgcttaaaatggtttcaactttcagGTCATTGCTGTAGGTTATGCTATTATGACAACAAGATCAATGGATATGAATTGGAAAATGAGGGCAATCCGAGTTTTGCCAATGTTTCTTTTGCCTGCCT
tattgat putative branch site (score: 3)
ctttc putative PPT
tttttataaatggatt TA-rich tract
