Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tattaggagaatggcatatatttagttaagtaatgctgtgattataactgatgtgaaaattgttcaattagacatttaactgcttgtagctaatttctagATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCCTTTACACACACGGAAG

Basic information

species Glycine max
transcript GLYMA11G16220.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193569511|gb|FK523126.1|FK523126
EST:     ACTTCTGCATATCAG                         ATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
genomic: ACTTCTGCATATCAGgttcctgcca ... taatttctagATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
EST: gi|298170350|gb|HO018974.1|HO018974
EST:     GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAG                         ATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
genomic: GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAGgttcctgcca ... taatttctagATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
EST: gi|151395074|gb|EV264945.1|EV264945
EST:     GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAG                         ATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
genomic: GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAGgttcctgcca ... taatttctagATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
EST: gi|151393509|gb|EV263384.1|EV263384
EST:     GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAG                         ATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
genomic: GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAGgttcctgcca ... taatttctagATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
EST: gi|192300022|gb|FG991840.1|FG991840
EST:     GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAG                         ATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
genomic: GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAGgttcctgcca ... taatttctagATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
EST: gi|298189266|gb|HO037669.1|HO037669
EST:     GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAG                         ATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
genomic: GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAGgttcctgcca ... taatttctagATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
EST: gi|208130516|gb|GD930165.1|GD930165
EST:     GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAG                         ATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
genomic: GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAGgttcctgcca ... taatttctagATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
EST: gi|208171597|gb|GD971938.1|GD971938
EST:     GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAG                         ATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
genomic: GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAGgttcctgcca ... taatttctagATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
EST: gi|208328399|gb|GE130103.1|GE130103
EST:     GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAG                         ATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
genomic: GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAGgttcctgcca ... taatttctagATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
EST: gi|298196849|gb|HO041592.1|HO041592
EST:     GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAG                         ATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
genomic: GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAGgttcctgcca ... taatttctagATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
EST: gi|192296626|gb|FG991194.1|FG991194
EST:     GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAG                         ATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
genomic: GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAGgttcctgcca ... taatttctagATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
EST: gi|298177939|gb|HO023788.1|HO023788
EST:     GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAG                         ATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
genomic: GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAGgttcctgcca ... taatttctagATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
EST: gi|208140882|gb|GD935686.1|GD935686
EST:     CTTCGGAGTTGCCACTTCTGCATATCAG                         ATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
genomic: CTTCGGAGTTGCCACTTCTGCATATCAGgttcctgcca ... taatttctagATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
EST: gi|208118658|gb|GD918341.1|GD918341
EST:     GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAG                         ATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
genomic: GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAGgttcctgcca ... taatttctagATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
EST: gi|208219559|gb|GE020615.1|GE020615
EST:     GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAG                         ATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
genomic: GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAGgttcctgcca ... taatttctagATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
EST: gi|193552401|gb|FK510320.1|FK510320
EST:     GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAG                         ATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
genomic: GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAGgttcctgcca ... taatttctagATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
EST: gi|192314382|gb|FK008058.1|FK008058
EST:     GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAG                         ATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
genomic: GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAGgttcctgcca ... taatttctagATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
EST: gi|208207703|gb|GE006266.1|GE006266
EST:     GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAG                         ATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
genomic: GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAGgttcctgcca ... taatttctagATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
EST: gi|208125711|gb|GD923415.1|GD923415
EST:     GTGACTTCCCTCCCAACTTCATCTTCGGGGTTGCCACTTCTGCATATCAG                         ATAGAAGGTGCTTGTAAGGAGGGTGGTAGA
genomic: GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAGgttcctgcca ... taatttctagATAGAAGGTGCTTGTAAGGAGGGTGGTAGA
EST: gi|192314383|gb|FK008059.1|FK008059
EST:     GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAG                         ATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
genomic: GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAGgttcctgcca ... taatttctagATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
EST: gi|208322070|gb|GE126003.1|GE126003
EST:     GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAG                         ATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
genomic: GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAGgttcctgcca ... taatttctagATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCC
EST: gi|193567955|gb|FK524292.1|FK524292
EST:     TTGCCACTTCTGCATATCAG                         ATAGAAGGTGCTTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGC
genomic: TTGCCACTTCTGCATATCAGgttcctgcca ... taatttctagATAGAAGGTGC-TTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGC
EST: gi|207692409|gb|GD675866.1|GD675866
EST:     GTGACTTCCCTCCCAACTTCAACTTCGGAGTTGCCACTTCTGCATATCAG                         ATAGAAGGTGCTTG
genomic: GTGACTTCCCTCCCAACTTCATCTTCGGAGTTGCCACTTCTGCATATCAGgttcctgcca ... taatttctagATAGAAGGTGCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactgatgtgaaaattgttcaattagacatttaactgcttgtagctaatttctagATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCCTTTACACACACGGAAG
                                                tttct  CT-rich tract
          aaaattgttcaatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tattaggagaatggcatatatttagttaagtaatgctgtgattataactgatgtgaaaattgttcaattagacatttaactgcttgtagctaatttctagATAGAAGGTGCTTGTAAGGAGGGTGGTAGAGGTCCTAGCATATGGGATGCCTTTACACACACGGAAG

- - - - - - -gcatata
- - - - - - - - - - - - - - - - - gctgtga
- - - - - - - - - - - - - - - - - - - - - - - actgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttgt