1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...agaatgtgtttattgcgtaagatgatattgtgtactagcttctaaaaagttgagccatgtcatgcttgtaatgattggaaggttttattgaatggtgcagTTTAAGGAAAGTGTTGCTCAATTTGCAACGGAAAATATTGCCCCTCATGCTTCGAAAATAGACCAAACAAATTATTTCCCAAAG
species | Glycine max |
transcript | GLYMA11G15900.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACTCTGCTGCTTTCTCCACCTCCTTGCTCTTCGACGAAACTCAGACACAG TTTAAGGAAAGTGTTGCTCAATTTGCAACGGAAAATATTGCCCCTCATGEST: gi|193510334|gb|FK467616.1|FK467616
genomic: ACTCTGCTGCTTTCTCCACCTCCTTGCTCTTCGACGAAACTCAGACACAGgttccttcat ... aatggtgcagTTTAAGGAAAGTGTTGCTCAATTTGCAACGGAAAATATTGCCCCTCATG
EST: ACTCTGCTGCTTTCTCCACCTCCTTGCTCTTCGACGAAACTCAGACACAG TTTAAGGAAAGTGTTGCTCAATTTGCAACGGAAAATATTGCCCCTCATGCTEST: gi|213600672|gb|DB956190.1|DB956190
genomic: ACTCTGCTGCTTTCTCCACCTCCTTGCTCTTCGACGAAACTCAGACACAGgttccttcat ... aatggtgcagTTTAAGGAAAGTGTTGCTCAATTTGCAACGGAAAATATTGCCCCTCATGCT
EST: ACTCTGCTGCTTTCTCCACCTCCTTGCTCTTCGACGAAACTCAGACACAG TTTAAGGAAAGTGTTGCTCAATTTGCAACGGAAAATATTGCCCCTCATGCTEST: gi|298198477|gb|HO040016.1|HO040016
genomic: ACTCTGCTGCTTTCTCCACCTCCTTGCTCTTCGACGAAACTCAGACACAGgttccttcat ... aatggtgcagTTTAAGGAAAGTGTTGCTCAATTTGCAACGGAAAATATTGCCCCTCATGCT
EST: ACTCTGCTGCTTTCTCCACCTCCTTGCTCTTCGACGAAACTCAGACACAG TTTAAGGAAAGTGTTGCTCAATTTGCAACGGAAAATATTGCCCCTCATGCTEST: gi|209712354|gb|BW671206.1|BW671206
genomic: ACTCTGCTGCTTTCTCCACCTCCTTGCTCTTCGACGAAACTCAGACACAGgttccttcat ... aatggtgcagTTTAAGGAAAGTGTTGCTCAATTTGCAACGGAAAATATTGCCCCTCATGCT
EST: ACTCTGCTGCTTTCTCCACCTCCTTGCTCTTCGACGAAACTCAGACACAG TTTAAGGAAAGTGTTGCTCAATTTGCAACGGAAAATATTGCCCCTCATGCTEST: gi|15663805|gb|BI701176.1|BI701176
genomic: ACTCTGCTGCTTTCTCCACCTCCTTGCTCTTCGACGAAACTCAGACACAGgttccttcat ... aatggtgcagTTTAAGGAAAGTGTTGCTCAATTTGCAACGGAAAATATTGCCCCTCATGCT
EST: ACTCTGCTGCTTTCTCCACCTCCTTGCTCTTCGACGAAACTCAGACACAG TTTAAGGAAAGTGTTGCTCAATTTGCAACGGAAAATATTGCCCCTCATGCT
genomic: ACTCTGCTGCTTTCTCCACCTCCTTGCTCTTCGACGAAACTCAGACACAGgttccttcat ... aatggtgcagTTTAAGGAAAGTGTTGCTCAATTTGCAACGGAAAATATTGCCCCTCATGCT
aaagttgagccatgtcatgcttgtaatgattggaaggttttattgaatggtgcagTTTAAGGAAAGTGTTGCTCAATTTGCAACGGAAAATATTGCCCCTCATGCTTCGAAAATAGACCAAACAAATTATTTCCCAAAG
ttttattgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaatgtgtttattgcgtaagatgatattgtgtactagcttctaaaaagttgagccatgtcatgcttgtaatgattggaaggttttattgaatggtgcagTTTAAGGAAAGTGTTGCTCAATTTGCAACGGAAAATATTGCCCCTCATGCTTCGAAAATAGACCAAACAAATTATTTCCCAAAG
-gaatgtg
- - - - - - - - - - - - - - tgtgtac
- - - - - - - - - - - - - - - - - - -gcttcta
- - - - - - - - - - - - - - - - - - - - - - - - - - agccatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggaagg