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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgactgtgcatcgtcactctacgctaattgcttagttgaagccgttgatggtttcagatttctaattttctttttaatttcagGAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG

Basic information

species Glycine max
transcript GLYMA11G15230.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213613664|gb|DB963324.1|DB963324
EST:     AGAGCCGGCTTCTCCCTCTGCGCAG                         GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: AGAGCCGGCTTCTCCCTCTGCGCAGgtttgtgact ... ttaatttcagGAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|209728121|gb|BW655356.1|BW655356
EST:     GCCGGCTTCTCCCTCTGCGCAG                         GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: GCCGGCTTCTCCCTCTGCGCAGgtttgtgact ... ttaatttcagGAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|192334633|gb|FK025866.1|FK025866
EST:     GAGCCGGCTTCTCCCTCTGCGCAG                         GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: GAGCCGGCTTCTCCCTCTGCGCAGgtttgtgact ... ttaatttcagGAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|193411707|gb|FK378632.1|FK378632
EST:     AGAGCCGGCTTCTCCCTCTGCGCAG                         GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAAG
genomic: AGAGCCGGCTTCTCCCTCTGCGCAGgtttgtgact ... ttaatttcagGAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCT-AAAG
EST: gi|213614607|gb|DB972847.1|DB972847
EST:     AGAGCCGGCTTCTCCCTCTGCGCAG                         GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: AGAGCCGGCTTCTCCCTCTGCGCAGgtttgtgact ... ttaatttcagGAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|192332926|gb|FK025023.1|FK025023
EST:     AGAGCCGGCTTCTCCCTCTGCGCAG                         GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: AGAGCCGGCTTCTCCCTCTGCGCAGgtttgtgact ... ttaatttcagGAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttagttgaagccgttgatggtttcagatttctaattttctttttaatttcagGAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
                              tttctaattttctttt  CT-rich tract
                       tttcagatttctaatt  TA-rich tract