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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcatacacgcacgccgcctctctctctttctcttattcttctgatttgttttctcgcaaaataaaaataaaaattaaggccctgtttggcgtggattctccgcgatgttctgattggcctttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAACCAACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCT

Basic information

species Glycine max
transcript GLYMA11G14980.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G14980.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv06s0004g04430.t01 (Vitis vinifera), 3'ss of exon 1
gtacgcatacacgcacgccgcctctctctctttctcttattcttctgatttgttttctcgcaaaataaaaataaaaattaaggccctgtttggcgtggattctccgcgatgttctgattggcctttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAACCAACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCT
                                     ||    ||  ||||    ||||      ||| || |           ||  ||||| | ||||||    |  |  | |  ||    ||   | ||||||||||| ||||||||||| || |||||||| |||||||||||||| || | ||| || |||||||||||||||||||| ||||| || |||||||||||
------------------------------------gtaacgatccaattttaaatctcttcgt-taagaaca-----------ccgttttggagcggattcgaaac--ttcttttttttttattcatttgcagATCTTTGTAAAAACCCCGTTGATGGCTTCTCCGCCGGTTTGGTCGACGAGAGCAATATCTTTGAATGGAGTGTCACCATTATTGGACCTCCCGATACTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207735848|gb|GD709333.1|GD709333
EST:     GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|298167627|gb|HO012890.1|HO012890
EST:     GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|298194743|gb|HO043215.1|HO043215
EST:     GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|213587556|gb|DB969697.1|DB969697
EST:     GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|14011884|gb|BG726806.1|BG726806
EST:     GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|298182929|gb|HO028142.1|HO028142
EST:     GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|208282209|gb|GE074175.1|GE074175
EST:     GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|298167833|gb|HO013096.1|HO013096
EST:     GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|8286011|gb|BE023499.1|BE023499
EST:     CTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: CTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|298183716|gb|HO028929.1|HO028929
EST:     GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|207769862|gb|GD742176.1|GD742176
EST:     GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|193465866|gb|FK433779.1|FK433779
EST:     GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCCCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|298167168|gb|HO010607.1|HO010607
EST:     GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|16104747|gb|BI892487.1|BI892487
EST:     GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|24205272|gb|BU964525.1|BU964525
EST:     GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|7284473|gb|AW597063.1|AW597063
EST:     GGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|213603235|gb|DB970406.1|DB970406
EST:     GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaggccctgtttggcgtggattctccgcgatgttctgattggcctttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAACCAACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCT
                                ttctgat  putative branch site (score: 3)
                                          cctttcctcgc  putative PPT