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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcagtaatgtaaattgtaaaacattgtaaaatacttaatatttatttgtacgggtacgctgtaatgtatctgagcttttactttggttgtttactctcagGCTTTCAAATTGAGTGCTCATTTATCTGATCACGGGTCTTGGATTGCTGGTTTTTTGTGTTTGATCCATCTATTTTGGCATGGTTCCTAAGATATGGTAT

Basic information

species Glycine max
transcript GLYMA11G14760.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193336342|gb|FK297682.1|FK297682
EST:     TCGCCGGAATTTCGCTTCGTCTGGTT-AAATCGCGACCTCTGAACAGCAG                         GCTTTCAAATTGAGTGCTCATTTATCTGATCACGGGTCTTGGATTGCTGG-
genomic: TCGCCGGAATTTCGCTTCGTCTGGTTAAAATCGCGACCTCTGAACAGCAGgtgaggattt ... ttactctcagGCTTTCAAATTGAGTGCTCATTTATCTGATCACGGGTCTTGGATTGCTGGT
EST: gi|193668511|gb|FK611825.1|FK611825
EST:     TCGCCGGAATTTCGCTTCGTCTGGTTAAAATCGCGACCTCTGAACAGCAG                         GCTTTCAAATTGAGTGCTCATTTATCTGATCACGGGTCTTGGATTGCTGGT
genomic: TCGCCGGAATTTCGCTTCGTCTGGTTAAAATCGCGACCTCTGAACAGCAGgtgaggattt ... ttactctcagGCTTTCAAATTGAGTGCTCATTTATCTGATCACGGGTCTTGGATTGCTGGT
EST: gi|208056017|gb|GD855446.1|GD855446
EST:     TCGCCGGAATTTCGCTTCGTCTGGTTAAAATCGCGACCTCTGAACAGCAG                         GCTTTCAAATTGAGTGCTCATTTATCTGATCACGGGTCTTGGATTGCTGGT
genomic: TCGCCGGAATTTCGCTTCGTCTGGTTAAAATCGCGACCTCTGAACAGCAGgtgaggattt ... ttactctcagGCTTTCAAATTGAGTGCTCATTTATCTGATCACGGGTCTTGGATTGCTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtacgggtacgctgtaatgtatctgagcttttactttggttgtttactctcagGCTTTCAAATTGAGTGCTCATTTATCTGATCACGGGTCTTGGATTGCTGGTTTTTTGTGTTTGATCCATCTATTTTGGCATGGTTCCTAAGATATGGTAT
                                            tttactctc  CT-rich tract
                              ttttacttt  TA-rich tract