1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tcagtaatgtaaattgtaaaacattgtaaaatacttaatatttatttgtacgggtacgctgtaatgtatctgagcttttactttggttgtttactctcagGCTTTCAAATTGAGTGCTCATTTATCTGATCACGGGTCTTGGATTGCTGGTTTTTTGTGTTTGATCCATCTATTTTGGCATGGTTCCTAAGATATGGTAT
species | Glycine max |
transcript | GLYMA11G14760.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGCCGGAATTTCGCTTCGTCTGGTTAAAATCGCGACCTCTGAACAGCAG GCTTTCAAATTGAGTGCTCATTTATCTGATCACGGGTCTTGGATTGCTGGTEST: gi|208056017|gb|GD855446.1|GD855446
genomic: TCGCCGGAATTTCGCTTCGTCTGGTTAAAATCGCGACCTCTGAACAGCAGgtgaggattt ... ttactctcagGCTTTCAAATTGAGTGCTCATTTATCTGATCACGGGTCTTGGATTGCTGGT
EST: TCGCCGGAATTTCGCTTCGTCTGGTTAAAATCGCGACCTCTGAACAGCAG GCTTTCAAATTGAGTGCTCATTTATCTGATCACGGGTCTTGGATTGCTGGTEST: gi|193336342|gb|FK297682.1|FK297682
genomic: TCGCCGGAATTTCGCTTCGTCTGGTTAAAATCGCGACCTCTGAACAGCAGgtgaggattt ... ttactctcagGCTTTCAAATTGAGTGCTCATTTATCTGATCACGGGTCTTGGATTGCTGGT
EST: TCGCCGGAATTTCGCTTCGTCTGGTT-AAATCGCGACCTCTGAACAGCAG GCTTTCAAATTGAGTGCTCATTTATCTGATCACGGGTCTTGGATTGCTGG-
genomic: TCGCCGGAATTTCGCTTCGTCTGGTTAAAATCGCGACCTCTGAACAGCAGgtgaggattt ... ttactctcagGCTTTCAAATTGAGTGCTCATTTATCTGATCACGGGTCTTGGATTGCTGGT
ttgtacgggtacgctgtaatgtatctgagcttttactttggttgtttactctcagGCTTTCAAATTGAGTGCTCATTTATCTGATCACGGGTCTTGGATTGCTGGTTTTTTGTGTTTGATCCATCTATTTTGGCATGGTTCCTAAGATATGGTAT
tttactctc CT-rich tract
ttttacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcagtaatgtaaattgtaaaacattgtaaaatacttaatatttatttgtacgggtacgctgtaatgtatctgagcttttactttggttgtttactctcagGCTTTCAAATTGAGTGCTCATTTATCTGATCACGGGTCTTGGATTGCTGGTTTTTTGTGTTTGATCCATCTATTTTGGCATGGTTCCTAAGATATGGTAT
- - - - - - - -gtaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cgctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtatctg