1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgataaactctcctaaacacttacactagtgtttatgtcatagtgaatgcacccttgcgatagttagtagcaatataatctatgttctctttctatcaagGTTACTCAAAGGTCGAAGCATACCCGGTAAAATATTATTGAGCCGTAGGGTAGATCCTCCCGATAACTCAAACTCGAAGATATCCTCACCAAATTACAAA
species | Glycine max |
transcript | GLYMA11G13330.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTACTACCCTCGACTCCAGATTCAATCAGACCCTCAGAAATGTTCAAGG GTTACTCAAAGGTCGAAGCATACCCGGTAAAATATTATTGAGCCGTAGGGTEST: gi|193393761|gb|FK359838.1|FK359838
genomic: GCTACTACCCTCGACTCCAGATTCAATCAGACCCTCAGAAATGTTCAAGGgtaaccctca ... ttctatcaagGTTACTCAAAGGTCGAAGCATACCCGGTAAAATATTATTGAGCCGTAGGGT
EST: TACTACCCTCGACTCCAGATTCAATCAGACCCTCAAGAAAATGTTCAAGG GTTACTCAAAGGTCGAAGCATACCCGGTAAAATATTATTGANCCGTAGGEST: gi|298167430|gb|HO012693.1|HO012693
genomic: TACTACCCTCGACTCCAGATTCAATCAGACCCTCA-GAAA-TGTTCAAGGgtaaccctca ... ttctatcaagGTTACTCAAAGGTCGAAGCATACCCGGTAAAATATTATTGAGCCGTAGG
EST: GCTACTACCCTCGACTCCAGATTCAATCAGACCCTCAGAAATGTTCAAGG GTTACTCAAAGGTCGAAGCATACCCGGTAAAATATTATTGAGCCGTAGGGTEST: gi|192333733|gb|FK025806.1|FK025806
genomic: GCTACTACCCTCGACTCCAGATTCAATCAGACCCTCAGAAATGTTCAAGGgtaaccctca ... ttctatcaagGTTACTCAAAGGTCGAAGCATACCCGGTAAAATATTATTGAGCCGTAGGGT
EST: GCTACTACCCTCGACTCCAGATTCAATCAGACCCTCAGAAATGTTCAAGG GTTACTCAAAGGTCGAAGCATACCCGGTAAAATATTATTGAGCCGTAGGGTEST: gi|31561508|gb|CD487346.1|CD487346
genomic: GCTACTACCCTCGACTCCAGATTCAATCAGACCCTCAGAAATGTTCAAGGgtaaccctca ... ttctatcaagGTTACTCAAAGGTCGAAGCATACCCGGTAAAATATTATTGAGCCGTAGGGT
EST: GCTACTACCCTCGACTCCAGATTCAATCAGACCCTCAGAAATGTTCAAGG GTTACTCAAAGGTCGAAGCATACCCGGTAAAATATTATTGAGCCGTAGGGTEST: gi|193353876|gb|FK321632.1|FK321632
genomic: GCTACTACCCTCGACTCCAGATTCAATCAGACCCTCAGAAATGTTCAAGGgtaaccctca ... ttctatcaagGTTACTCAAAGGTCGAAGCATACCCGGTAAAATATTATTGAGCCGTAGGGT
EST: GCTACTACCCTCGACTCCAGATTCAATCAGACCCTCAGAAATGTTCAAGG GTTACTCAAAGGTCGAAGCATACCCGGTAAAAATATTATTGAGCCGTAGGG
genomic: GCTACTACCCTCGACTCCAGATTCAATCAGACCCTCAGAAATGTTCAAGGgtaaccctca ... ttctatcaagGTTACTCAAAGGTCGAAGCATACCCGGTAAAA-TATTATTGAGCCGTAGGG
aatgcacccttgcgatagttagtagcaatataatctatgttctctttctatcaagGTTACTCAAAGGTCGAAGCATACCCGGTAAAATATTATTGAGCCGTAGGGTAGATCCTCCCGATAACTCAAACTCGAAGATATCCTCACCAAATTACAAA
tctatgttctctttct CT-rich tract
aatataatctatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgataaactctcctaaacacttacactagtgtttatgtcatagtgaatgcacccttgcgatagttagtagcaatataatctatgttctctttctatcaagGTTACTCAAAGGTCGAAGCATACCCGGTAAAATATTATTGAGCCGTAGGGTAGATCCTCCCGATAACTCAAACTCGAAGATATCCTCACCAAATTACAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA