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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttccttgcatttctcgctccttcctacttatgcctttgattccacgttttttcttaattgacatctcttttttttttttttttcagGTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG

Basic information

species Glycine max
transcript GLYMA11G11960.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209703098|gb|BW673283.1|BW673283
EST:     GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCC                         GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
genomic: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCCgttagttcct ... tttttttcagGTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
EST: gi|209705156|gb|BW667788.1|BW667788
EST:     GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCC                         GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGAGGATGAT
genomic: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCCgttagttcct ... tttttttcagGTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGAGGATGAT
EST: gi|10709996|gb|BF009720.1|BF009720
EST:     GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCC                         GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGGTG
genomic: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCCgttagttcct ... tttttttcagGTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
EST: gi|209722769|gb|BW682867.1|BW682867
EST:     GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCC                         GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
genomic: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCCgttagttcct ... tttttttcagGTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
EST: gi|8826251|gb|BE209981.1|BE209981
EST:     GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCC                         GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
genomic: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCCgttagttcct ... tttttttcagGTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
EST: gi|27446333|gb|CA953456.1|CA953456
EST:     GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCC                         GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
genomic: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCCgttagttcct ... tttttttcagGTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
EST: gi|20813646|gb|BQ298124.1|BQ298124
EST:     GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCC                         GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
genomic: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCCgttagttcct ... tttttttcagGTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
EST: gi|209725283|gb|BW672760.1|BW672760
EST:     GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCC                         GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
genomic: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCCgttagttcct ... tttttttcagGTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
EST: gi|193499460|gb|FK461255.1|FK461255
EST:     GTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCC                         GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
genomic: GTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCCgttagttcct ... tttttttcagGTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
EST: gi|213595316|gb|DB968448.1|DB968448
EST:     GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCC                         GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
genomic: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCCgttagttcct ... tttttttcagGTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
EST: gi|209714966|gb|BW650812.1|BW650812
EST:     GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCC                         GTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
genomic: GAAGTTTCGCCCTCGTCATTCAGCAACTCGGCACCGAGCTTCGCAACGCCgttagttcct ... tttttttcagGTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcctttgattccacgttttttcttaattgacatctcttttttttttttttttcagGTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTG
                        aattgac  putative branch site (score: 3)
               ttttttcttaattgac  CT-rich tract
               ttttttcttaattgac  TA-rich tract