1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgtgcaatatctgatacttgtgtgtgcttcatgctggctaaatctgtattatataataataccctttgatgcttaatggagctttattaatggctggcagATGAATTTTAACAACGTGAATGCTCCAAAGGTTCCTGGTGGCGGAGTCGCTGCTTTGCTTAAAGTTGGCATTATTGGTGGGCTTGTTGTATATGGGGCTG
species | Glycine max |
transcript | GLYMA11G11670.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTAGTTCAACTCGCCACTTAGCGGAAACCTCTACAAACATTGCCTCCAAG ATGAATTTTAACAACGTGAATGCTCCAAAGGTTCCTGGTGGCGGAGTCGCTEST: gi|17962874|gb|BM269622.1|BM269622
genomic: TTAGTTCAACTCGCCACTTAGCGGAAACCTCTACAAACATTGCCTCCAAGgtgcgcgcta ... tggctggcagATGAATTTTAACAACGTGAATGCTCCAAAGGTTCCTGGTGGCGGAGTCGCT
EST: GGAAACCTCTACAAACATTGCCTCCAAG ATGAATTTTAACAACGTGAATGCTCCAAAGGTTCCTGGTGGCGGAGTCGCT
genomic: GGAAACCTCTACAAACATTGCCTCCAAGgtgcgcgcta ... tggctggcagATGAATTTTAACAACGTGAATGCTCCAAAGGTTCCTGGTGGCGGAGTCGCT
gtattatataataataccctttgatgcttaatggagctttattaatggctggcagATGAATTTTAACAACGTGAATGCTCCAAAGGTTCCTGGTGGCGGAGTCGCTGCTTTGCTTAAAGTTGGCATTATTGGTGGGCTTGTTGTATATGGGGCTG
tattaat putative branch site (score: 2)
atataataata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgcaatatctgatacttgtgtgtgcttcatgctggctaaatctgtattatataataataccctttgatgcttaatggagctttattaatggctggcagATGAATTTTAACAACGTGAATGCTCCAAAGGTTCCTGGTGGCGGAGTCGCTGCTTTGCTTAAAGTTGGCATTATTGGTGGGCTTGTTGTATATGGGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG