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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattatgtctgtctgtctgtgatgaagtttcatcttgatattgcaacgtttggactaactgtatacttgctactttgtacatgaatttttcaatttttcagGTTGTGAGCATAAAGGCCATTGGAATTGCAATAAAGCTTACACTTGATGGAATAAGTCAAATAGTTTATCCTCAGACTTGGTTTTTTCTTACCGTGGCCA

Basic information

species Glycine max
transcript GLYMA11G11230.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G11230.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv03s0038g01940.t01 (Vitis vinifera), 3'ss of exon 5
-----------------------------gtaattatg-----tctgtctgtctgtgatgaa-gtttcatcttgatattgcaacgtttg--gactaactgtatacttgctactttgtacatgaatttttcaatttttcagGTTGTGAGCATAAAGGCCATTGGAATTGCAATAAAGCTTACACTTGATGGAATAAGTCAAATAGTTTATCCTCAGACTTGGTTTTTTCTTACCGTGGCCA
                             |||  || |     ||||| | |  | | |  | |  |  || |   |||| ||| ||||         |   | ||   |  || | ||||   | || |  || | |||||||| ||||||||||| ||||||||||| ||||||||||| || || || ||||||||| | | ||||||||| ||||||||||| ||||| || ||  
gtaattatgttgcctttttaagtctccaagtagctaggggcactctgttttttggaggtttatggcttttcatttcattgtaacatttgctactctgttcggtgctcagtctttggaacatttctcttgctgttctgcagGTTGTAAGCATAAAGGCTATTGGAATTGCTATAAAGCTTACTCTGGAGGGGATAAGTCAAGTTGCTTATCCTCAAACTTGGTTTTTCCTTACTGTTGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtttggactaactgtatacttgctactttgtacatgaatttttcaatttttcagGTTGTGAGCATAAAGGCCATTGGAATTGCAATAAAGCTTACACTTGATGGAATAAGTCAAATAGTTTATCCTCAGACTTGGTTTTTTCTTACCGTGGCCA
      gactaac  putative branch site (score: 1)
                                       tttttcaatttttc  putative PPT
                               tacatgaatttttcaa  TA-rich tract