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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtcaaagtattggatctgaaaaataagaaatcagtaaagtctaatctattatagtgtttttaaggtattgattgatgctagtttccttatgtagatttagGGTCCCTTCTGCCATACTGCGCACATTGAAGATGACAACAACATCATTTTCTGGCTTGCAATTTGCAATGTCAAGATCATGCATTCCTTCATCACAAAAG

Basic information

species Glycine max
transcript GLYMA11G10770.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18039953|gb|BM308247.1|BM308247
EST:     TTGCATTGCTCTTTTCAACTCGTCACATTGGCTCATTTATCACCCATCAGATTTAG                    
genomic: TTGCATTGCTCTTTTCAACTCGTCACATTGGCTCATTTATCACCCATC------AGgtaaccccca ... gtaga
EST: gi|298166168|gb|HO009139.1|HO009139
EST:     ACATTGGCTCATTTATCACCCATCAGATTTAG                    
genomic: ACATTGGCTCATTTATCACCCATC------AGgtaaccccca ... gtaga
EST: gi|7796132|gb|AW781529.1|AW781529
EST:     TTGCATTGCTCTTTTCAACTCGTCACATTGGCTCATTTATCACCCATCAGATTTAG                    
genomic: TTGCATTGCTCTTTTCAACTCGTCACATTGGCTCATTTATCACCCATC------AGgtaaccccca ... gtaga
EST: gi|192307619|gb|FG999658.1|FG999658
EST:     GCTCTTTTCAACTCGTCACATTGGCTCATTTATCACCCATCAGATTTAG                    
genomic: GCTCTTTTCAACTCGTCACATTGGCTCATTTATCACCCATC------AGgtaaccccca ... gtaga
EST: gi|209721947|gb|BW680082.1|BW680082
EST:     TTGCATTGCTCTTTTCAACTCGTCACATTGGCTCATTTATCACCCATCAGATTTAG                    
genomic: TTGCATTGCTCTTTTCAACTCGTCACATTGGCTCATTTATCACCCATC------AGgtaaccccca ... gtaga
EST: gi|7041859|gb|AW471753.1|AW471753
EST:     TTGCATTGCTCTTTTCAACTCGTCACATTGGCTCATTTATCACCCATCAGATTTAG                    
genomic: TTGCATTGCTCTTTTCAACTCGTCACATTGGCTCATTTATCACCCATC------AGgtaaccccca ... gtaga
EST: gi|298168738|gb|HO009668.1|HO009668
EST:     ACATTGGCTCATTTATCACCCATCAGATTTAG                    
genomic: ACATTGGCTCATTTATCACCCATC------AGgtaaccccca ... gtaga
EST: gi|192306220|gb|FG995056.1|FG995056
EST:     GCTCTTTTCAACTCGTCACATTGGCTCATTTATCACCCATCAGATTTAG                    
genomic: GCTCTTTTCAACTCGTCACATTGGCTCATTTATCACCCATC------AGgtaaccccca ... gtaga


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctattatagtgtttttaaggtattgattgatgctagtttccttatgtagatttagGGTCCCTTCTGCCATACTGCGCACATTGAAGATGACAACAACATCATTTTCTGGCTTGCAATTTGCAATGTCAAGATCATGCATTCCTTCATCACAAAAG
         tgtttttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcaaagtattggatctgaaaaataagaaatcagtaaagtctaatctattatagtgtttttaaggtattgattgatgctagtttccttatgtagatttagGGTCCCTTCTGCCATACTGCGCACATTGAAGATGACAACAACATCATTTTCTGGCTTGCAATTTGCAATGTCAAGATCATGCATTCCTTCATCACAAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgct