1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tagttgacgagtatattcgtttatatcccgtccgcatacatgtttggtgatagcatggattaaatattaaattgttttaatcatgttattctttgatcagGACTGAGAAAGGAACATATTATGCACTAGATCTTGGGGGTACAAATTTTAGGGTTTTGCGGGTTCATTTGCATGGTCAACAATCGTCTGTTTTGGAACAT
species | Glycine max |
transcript | GLYMA11G10130.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGTTCTAAGCTCAAAATGCTTATAACATTTGTTCATAATCTCCCTAATGG GACTGAGAAAGGAACATATTATGCACTAGATCTTGGGGGTACAAATTTTAG
genomic: GGTTCTAAGCTCAAAATGCTTATAACATTTGTTCATAATCTCCCTAATGGgtaatctaat ... ctttgatcagGACTGAGAAAGGAACATATTATGCACTAGATCTTGGGGGTACAAATTTTAG
ggtgatagcatggattaaatattaaattgttttaatcatgttattctttgatcagGACTGAGAAAGGAACATATTATGCACTAGATCTTGGGGGTACAAATTTTAGGGTTTTGCGGGTTCATTTGCATGGTCAACAATCGTCTGTTTTGGAACAT
ttttaat putative branch site (score: 3)
ttattcttt putative PPT
attaaatattaaattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagttgacgagtatattcgtttatatcccgtccgcatacatgtttggtgatagcatggattaaatattaaattgttttaatcatgttattctttgatcagGACTGAGAAAGGAACATATTATGCACTAGATCTTGGGGGTACAAATTTTAGGGTTTTGCGGGTTCATTTGCATGGTCAACAATCGTCTGTTTTGGAACAT
- - - - - - - - - - - - - cccgtcc
- - - - - - - - - - - - - - - - -gcataca
- - - - - - - - - - - - - - - - - - - - - tttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - gcatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgtt