1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ccataaacttttctgtgctcttttatgagttgtgctgttcttctctttatttcggatgtgctagtatcctaattatacatttttacctttctggctgtagACGGACTAGACCACCCATTACCAAGAAGCTACTGATGTCATTCTTCTTTCTTGGATTGACTGG
species | Glycine max |
transcript | GLYMA11G09540.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATTTCCTTGCCTTCACTATTGTTGCTCCGCTCGCNNNNNNNCTTGAAAG ACGGACTAGACCACCCATTACCAAGAAGCTACTGATGTCATTCTTCTTTCTEST: gi|22521758|gb|BU080569.1|BU080569
genomic: GATTTCCTTGCCTTCACTATTGTTGCTCCGCTCGCTTTTTTTCTTGAAAGgcatgctctt ... ctggctgtagACGGACTAGACCACCCATTACCAAGAAGCTACTGATGTCATTCTTCTTTCT
EST: GATTTCCTTGCCTTCACTATTGTTGCTCCGCTCGCNNNNNNNCTTGAAAG ACGGACTAGACCACCCATTACCAAGAAGCTACTGATGTCATTCTTCTTTCTEST: gi|18040971|gb|BM309265.1|BM309265
genomic: GATTTCCTTGCCTTCACTATTGTTGCTCCGCTCGCTTTTTTTCTTGAAAGgcatgctctt ... ctggctgtagACGGACTAGACCACCCATTACCAAGAAGCTACTGATGTCATTCTTCTTTCT
EST: GATTTCCTTGCCTTCACTATTGTTGCTCCGCTCGCNNNNNNNCTTGAAAG ACGGACTAGACCACCCATTACCAAGAAGCTACTGATGTCATTCTTCTTTCT
genomic: GATTTCCTTGCCTTCACTATTGTTGCTCCGCTCGCTTTTTTTCTTGAAAGgcatgctctt ... ctggctgtagACGGACTAGACCACCCATTACCAAGAAGCTACTGATGTCATTCTTCTTTCT
tttatttcggatgtgctagtatcctaattatacatttttacctttctggctgtagACGGACTAGACCACCCATTACCAAGAAGCTACTGATGTCATTCTTCTTTCTTGGATTGACTGG
tcctaat putative branch site (score: 2)
catttttacctttct putative PPT
tatcctaattatacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccataaacttttctgtgctcttttatgagttgtgctgttcttctctttatttcggatgtgctagtatcctaattatacatttttacctttctggctgtagACGGACTAGACCACCCATTACCAAGAAGCTACTGATGTCATTCTTCTTTCTTGGATTGACTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - -tctgtgc
- - - - - - - - - - - - - - - - tgctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - -ggatgtg