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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caaatttgttgataaaaaaaataaagaaattaaagactttttcttttcttttcttaactgcataataacttgaacatttgttggttttattattgtgcagGTCAAGCAGGTTTGCGAGATTGCAAGATATTAAGGCTGCAATAGCAGGGAAGAATTTGTACATTAGATTCAGTTGCACTACCGGGGATGCCATGGGGATG

Basic information

species Glycine max
transcript GLYMA11G09330.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17401231|gb|BM178013.1|BM178013
EST:     TACCTCGAAGACCCTCTTAATTTCGATTCCCTTGCCGTCGTTTTCAACAA                         GTCAAGCAGGTTTGCGAGATTGCAAGATATTAAGGCTGCAATAGCAGGGAA
genomic: TACCTCGAAGACCCTCTTAATTTCGATTCCCTTGCCGTCGTTTTCAACAAgtaagtttgt ... tattgtgcagGTCAAGCAGGTTTGCGAGATTGCAAGATATTAAGGCTGCAATAGCAGGGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttttcttaactgcataataacttgaacatttgttggttttattattgtgcagGTCAAGCAGGTTTGCGAGATTGCAAGATATTAAGGCTGCAATAGCAGGGAAGAATTTGTACATTAGATTCAGTTGCACTACCGGGGATGCCATGGGGATG
                 taataac  putative branch site (score: 1)
                                       ttttatt  putative PPT
                                   ttggttttattatt  TA-rich tract