1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagtctttctcttcatttctttttcttttcttaaaaaaattccaagttttgatacactccgtcggtattaatatgcaattgtctgttctttttgggaatgcggcagGTACATGGACAAGAAGCTTCAGA
species | Glycine max |
transcript | GLYMA11G09150.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCACCATGAGCAGGTCAGGCCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|31561892|gb|CD487730.1|CD487730
genomic: TCACCATGAGCAGGTCAGGCCAACCACCGGATTTGAAGAAgtaagtcttt ... aatgcggcagGTACATGGACAAGAAGCTTCAGA
EST: CACTTCTTCATCACCATGAGCAGGTCAGGCCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|254346216|gb|GR859829.1|GR859829
genomic: CACTTCTTCATCACCATGAGCAGGTCAGGCCAACCACCGGATTTGAAGAAgtaagtcttt ... aatgcggcagGTACATGGACAAGAAGCTTCAGA
EST: CACTTCTTCATCACCATGAGCAGGTCAGGCCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|298176503|gb|HO026738.1|HO026738
genomic: CACTTCTTCATCACCATGAGCAGGTCAGGCCAACCACCGGATTTGAAGAAgtaagtcttt ... aatgcggcagGTACATGGACAAGAAGCTTCAGA
EST: CACTTCTTCATCACCATGAGCAGGTCAGGCCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|151398942|gb|EV268813.1|EV268813
genomic: CACTTCTTCATCACCATGAGCAGGTCAGGCCAACCACCGGATTTGAAGAAgtaagtcttt ... aatgcggcagGTACATGGACAAGAAGCTTCAGA
EST: CACTTCTTCATCACCATGAGCAGGTCAGGCCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|192327127|gb|FK015519.1|FK015519
genomic: CACTTCTTCATCACCATGAGCAGGTCAGGCCAACCACCGGATTTGAAGAAgtaagtcttt ... aatgcggcagGTACATGGACAAGAAGCTTCAGA
EST: CACTTCTTCATCACCATGAGCAGGTCAGGCCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|31467429|gb|CD409457.1|CD409457
genomic: CACTTCTTCATCACCATGAGCAGGTCAGGCCAACCACCGGATTTGAAGAAgtaagtcttt ... aatgcggcagGTACATGGACAAGAAGCTTCAGA
EST: CACTTCTTCATCACCATGAGCAGGTCAGGCCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|31306974|gb|CD392177.1|CD392177
genomic: CACTTCTTCATCACCATGAGCAGGTCAGGCCAACCACCGGATTTGAAGAAgtaagtcttt ... aatgcggcagGTACATGGACAAGAAGCTTCAGA
EST: CACTTCTTCATCACCATGAGCAGGTCAGGCCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|151412914|gb|EV282726.1|EV282726
genomic: CACTTCTTCATCACCATGAGCAGGTCAGGCCAACCACCGGATTTGAAGAAgtaagtcttt ... aatgcggcagGTACATGGACAAGAAGCTTCAGA
EST: CACTTCTTCATCACCATGAGCAGGTCAGGCCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|19452429|gb|BM953839.1|BM953839
genomic: CACTTCTTCATCACCATGAGCAGGTCAGGCCAACCACCGGATTTGAAGAAgtaagtcttt ... aatgcggcagGTACATGGACAAGAAGCTTCAGA
EST: GCCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|33388212|gb|CA851419.1|CA851419
genomic: GCCAACCACCGGATTTGAAGAAgtaagtcttt ... aatgcggcagGTACATGGACAAGAAGCTTCAGA
EST: ACTTCTTCATCACCATGAGCAGGTCAGGNCAACCACCGGNATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|6667111|gb|AW278570.1|AW278570
genomic: ACTTCTTCATCACCATGAGCAGGTCAGGCCAACCACCGG-ATTTGAAGAAgtaagtcttt ... aatgcggcagGTACATGGACAAGAAGCTTCAGA
EST: CACTTCTTCATCACCATGAGCAGGTCAGGCCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|193327961|gb|FK295550.1|FK295550
genomic: CACTTCTTCATCACCATGAGCAGGTCAGGCCAACCACCGGATTTGAAGAAgtaagtcttt ... aatgcggcagGTACATGGACAAGAAGCTTCAGA
EST: ACTTCTTCATCACCATGAGCAGGTCAGGCCAACCTACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGAEST: gi|151410461|gb|EV280276.1|EV280276
genomic: ACTTCTTCATCACCATGAGCAGGTCAGGCCAACC-ACCGGATTTGAAGAAgtaagtcttt ... aatgcggcagGTACATGGACAAGAAGCTTCAGA
EST: CACTTCTTCATCACCATGAGCAGGTCAGGCCAACCACCGGATTTGAAGAA GTACATGGACAAGAAGCTTCAGA
genomic: CACTTCTTCATCACCATGAGCAGGTCAGGCCAACCACCGGATTTGAAGAAgtaagtcttt ... aatgcggcagGTACATGGACAAGAAGCTTCAGA
atacactccgtcggtattaatatgcaattgtctgttctttttgggaatgcggcagGTACATGGACAAGAAGCTTCAGA
tattaat putative branch site (score: 2)
tattaatatgcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtctttctcttcatttctttttcttttcttaaaaaaattccaagttttgatacactccgtcggtattaatatgcaattgtctgttctttttgggaatgcggcagGTACATGGACAAGAAGCTTCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC