Sequence
atgc intronic sequence ATGC exonic sequence...aacgggaatttgaaccttgttcaccacgttgtagtagactaggcccttctgttagacccaattctcaattgttattactgattgatggtgttatgtgcagGCGGAGAAGGAGCCGATTCTGAGTAGCTTCTTGTACGCTAGCATTTTGGCGCATGATTGCTTGGAGCAAGCATTGGCGTTTGTCGCCGCTAATCGTCTCC
Basic information
species | Glycine max |
transcript | GLYMA11G08930.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G08930.1 (Glycine max), 3'ss of exon 1
lower sequence: AT2G17640.1 (Arabidopsis thaliana), 3'ss of exon 1
-aacgggaatttgaaccttgttcaccacgttgtagtagactaggcccttctgttagacccaattctcaattgttattactgattgatggtgttatgtg---cagGCGGAGAAGGAGCCGATTCTGAGTAGCTTCTTGTACGCTAGCATTTTGGCGCATGATTGCTTGGAGCAAGCATTGGCGTTTGTCGCCGCTAATCGTCTCC
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agccttgatatttaatccaaccaaacataggacaagaaagtttgag-tacagtttg--tgaaatgttgaatcttat-aatggtgaatcttgttgtgcgtttcagGCAGAGAAAGAGCCTATTTTGAGTAGCTTCTTGTATGCTGGTATCTTAGCACATGATTGTTTAGAGCAAGCTTTAGGGTTTGTTCTAGCCAACCGTCTCC
upper sequence: GLYMA11G08930.1 (Glycine max), 3'ss of exon 1
lower sequence: AT4G35640.1 (Arabidopsis thaliana), 3'ss of exon 1
aacgggaatttgaaccttgtt-caccacgttgtagtagactaggcccttctgttagacccaattctcaattgttattactgattgatggtgttatgtgcagGCGGAGAAGGAGCCGATTCTGAGTAGCTTCTTGTACGCTAGCATTTTGGCGCATGATTGCTTGGAGCAAGCATTGGCGTTTGTCGCCGCTAATCGTCTCC
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agcgtcaatttttcattaactacacgaaggacaagttaaggaacagagtttgtgtgtgtttatgttcctttaatggtgaatattgttg-tgtgttttacagGCAGAAGAGGAGCCGGTTTTGAGTAGCTTCTTGTATGCTAGTATCTTGTCGCATGACTGTTTAGAGCAAGCATTGAGTTTTGTTCTAGCTAACCGTCTCC
upper sequence: GLYMA11G08930.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv04s0210g00190.t01 (Vitis vinifera), 3'ss of exon 1
aacgggaatttgaaccttgttcaccacgttgtagtagactaggcccttctgttagacccaattctcaattgttattac--tgattgatggtgttatgtg------cagGCGGAGAAGGAGCCGATTCTGAGTAGCTTCTTGTACGCTAGCATTTTGGCGCATGATTGCTTGGAGCAAGCATTGGCGTTTGTCGCCGCTAATCGTCTCC
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----ggtggtggtgtcggggt-gttgggctggaagagaat---ttcgtttggaagaataatttgttatctgatcttgacatatttgttgctaccatgcaatgtttcagGCGGAGAAGGAGCCAATTCTAAGTAGCTTCTTGTATGCCAGTATTTTGTCCCATGACTGTTTAGAGCAAGCATTGGCATTTGTTCTTGCAAATCGACTTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16348719|gb|BI974314.1|BI974314EST: ACGGACCCGACCCGATTTGGAACGCTGTCAGGGACGAAGCCAAGCTCGAG GCGGAGAAGGAGCCGATTCTGAGTAGCTTCTTGTACGCTAGCATTTTGGCG
genomic: ACGGACCCGACCCGATTTGGAACGCTGTCAGGGACGAAGCCAAGCTCGAGgcacatccct ... ttatgtgcagGCGGAGAAGGAGCCGATTCTGAGTAGCTTCTTGTACGCTAGCATTTTGGCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttctgttagacccaattctcaattgttattactgattgatggtgttatgtgcagGCGGAGAAGGAGCCGATTCTGAGTAGCTTCTTGTACGCTAGCATTTTGGCGCATGATTGCTTGGAGCAAGCATTGGCGTTTGTCGCCGCTAATCGTCTCC
aattgttatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aacgggaatttgaaccttgttcaccacgttgtagtagactaggcccttctgttagacccaattctcaattgttattactgattgatggtgttatgtgcagGCGGAGAAGGAGCCGATTCTGAGTAGCTTCTTGTACGCTAGCATTTTGGCGCATGATTGCTTGGAGCAAGCATTGGCGTTTGTCGCCGCTAATCGTCTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - tcaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatggtg