1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...taacaaattaaaacccatgtattgtattatatggccacgttctgatttctttacacggaattgttgaattttgaactaacaatattttggcggattgcagGACGTGGGGAATCATAAGTATGACTCTGGCGTTCATATGGCAACTCTATACCTTATGGCTGCTGGTCAACCTTCATGAGTCGGTAGAACAAGGTGTACGC
species | Glycine max |
transcript | GLYMA11G08770.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTGGAATTCAGGCCCTTGTTCTCCCTGTGGCCTTCACTTTTCTTGGTTG GACGTGGGGAATCATAAGTATGACTCTGGCGTTCATATGGCAACTCTATACEST: gi|193513348|gb|FK471456.1|FK471456
genomic: ATTGGAATTCAGGCCCTTGTTCTCCCTGTGGCCTTCACTTTTCTTGGTTGgtaagtcttc ... cggattgcagGACGTGGGGAATCATAAGTATGACTCTGGCGTTCATATGGCAACTCTATAC
EST: TTGGAATTCAGGCCCTTGTTCTCCCTGTGGCCTTCACTTTTCTTTGGTTG GACGTGGGGAATCATCAGTATGACTCTGGCGTTCATATGGCAACTCTATAEST: gi|192327909|gb|FK022454.1|FK022454
genomic: TTGGAATTCAGGCCCTTGTTCTCCCTGTGGCCTTCACTTTTCTT-GGTTGgtaagtcttc ... cggattgcagGACGTGGGGAATCATAAGTATGACTCTGGCGTTCATATGGCAACTCTATA
EST: ATTGGAATTCAGGCCCTTGTTCTCCCTGTGGCCTTCACTTTTCTTGGTTG GACGTGGGGGAATCATAAGTATGACTCTGGCGTTCATATGGCAACTCTATAEST: gi|193667600|gb|FK613562.1|FK613562
genomic: ATTGGAATTCAGGCCCTTGTTCTCCCTGTGGCCTTCACTTTTCTTGGTTGgtaagtcttc ... cggattgcagGACGTGGGG-AATCATAAGTATGACTCTGGCGTTCATATGGCAACTCTATA
EST: ATTGGAATTCAGGCCCTTGTTCTCCCTGTGGCCTTCACTTTTCTTGGTTG GACGTGGGGAATCATCAGTATGACTCTGGCGTTCATATGGCAACTCTATAC
genomic: ATTGGAATTCAGGCCCTTGTTCTCCCTGTGGCCTTCACTTTTCTTGGTTGgtaagtcttc ... cggattgcagGACGTGGGGAATCATAAGTATGACTCTGGCGTTCATATGGCAACTCTATAC
tttctttacacggaattgttgaattttgaactaacaatattttggcggattgcagGACGTGGGGAATCATAAGTATGACTCTGGCGTTCATATGGCAACTCTATACCTTATGGCTGCTGGTCAACCTTCATGAGTCGGTAGAACAAGGTGTACGC
aactaac putative branch site (score: 1)
aattttgaactaacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taacaaattaaaacccatgtattgtattatatggccacgttctgatttctttacacggaattgttgaattttgaactaacaatattttggcggattgcagGACGTGGGGAATCATAAGTATGACTCTGGCGTTCATATGGCAACTCTATACCTTATGGCTGCTGGTCAACCTTCATGAGTCGGTAGAACAAGGTGTACGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - aaattaaa
- - - - - - - ccatgta
- - - - - - - - - - - - - - - - ggccacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actaaca