1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tccaaagtttggttaatgtttttcttatatccctaccctagtgttttaaccattaaggtgtggtgtgtgctttgtttaaggttgtttttgtcttctgcagTTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTGAGAGTGGCTTCATTCGAGGGGCTGCTGTTGGTGCCATATCAGGAGCTGT
species | Glycine max |
transcript | GLYMA11G08540.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAG TTGGCACTTTGTTGGGGGCCTTGACTGGAGCTTTGATAGGACAAGAAACTGEST: gi|209720570|gb|BW677305.1|BW677305
genomic: AGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAGgtttgattcg ... tcttctgcagTTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTG
EST: AGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAG TTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTGEST: gi|298186796|gb|HO037429.1|HO037429
genomic: AGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAGgtttgattcg ... tcttctgcagTTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTG
EST: AGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAG TTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTGEST: gi|298187780|gb|HO031737.1|HO031737
genomic: AGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAGgtttgattcg ... tcttctgcagTTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTG
EST: AGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAG TTGGCACTTTGTTGGGGGCTTTGACTGGAEST: gi|298184657|gb|HO029870.1|HO029870
genomic: AGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAGgtttgattcg ... tcttctgcagTTGGCACTTTGTTGGGGGCTTTGACTGGA
EST: AGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAG TTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTG
genomic: AGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAGgtttgattcg ... tcttctgcagTTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTG
ttaaccattaaggtgtggtgtgtgctttgtttaaggttgtttttgtcttctgcagTTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTGAGAGTGGCTTCATTCGAGGGGCTGCTGTTGGTGCCATATCAGGAGCTGT
ttttaac putative branch site (score: 2)
ttgtttttgtcttct putative PPT
tttgtttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccaaagtttggttaatgtttttcttatatccctaccctagtgttttaaccattaaggtgtggtgtgtgctttgtttaaggttgtttttgtcttctgcagTTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTGAGAGTGGCTTCATTCGAGGGGCTGCTGTTGGTGCCATATCAGGAGCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - -cctaccc
- - - - - - - - - - - - - - - - - - - - - - - - -ccattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttgtt