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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gattgaagtcgatgatgctattggcgtcccgtttgtggtttgcgttttgtgattctgtgtttactgacttggcttgttgccgttttcgtgtgctgtttagGGATGCCTATATGTGAAGCATTTGCTCAGATAGAGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAG

Basic information

species Glycine max
transcript GLYMA11G07910.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07910.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G51130.1 (Arabidopsis thaliana), 3'ss of exon 1
-----gattgaagtcgatgatgctattggcgtcccgtttgtggtttgcgttttgtgattctgtgtttactgacttggcttgttgccgttttcgtgtgctgtttagGGATGCCTATATGTGAAGCATTTGCTCAGATAGAGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAG
       |   ||   ||| || | || |  |     || |         | | | ||  |  | | |  ||   | ||  |    ||| | ||||  | || ||| ||||| || ||||||||||||||||| ||||||||||| ||||||||||| ||||| || ||||| || || |  || |||
tctttagtaatagcaaatgctg-tgttagttttttagttctttagcagactgtttcatcttccgatca--gaaccgactaatcaa-gttgttgtgttgt-ttcagGAATGCCGATTTGTGAAGCATTTGCTCAAATAGAGCAGCAGCCTAACATATATGATGTTGTTCATGTTAAATACTACGACGAG

upper sequence: GLYMA11G07910.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv04s0023g02970.t01 (Vitis vinifera), 3'ss of exon 1
gattgaagtcgatgatgctattggcgtcccgtttgtggtttgcgttttgtgattctgtgtttactgacttggc-ttgttgccgttt--tcgtgtgctgttt-agGGATGCCTATATGTGAAGCATTTGCTCAGATAGAGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAG
     |  ||||   || |       | ||  | |    |  | | ||||| || |   |||  | |   ||   |||      ||  |   ||  ||||| ||||||||| || |   |||| |||||||| |||||||| || |||||||| |||||||| || || |||||||||||||| |||
----aatatcgactctgtttgacaatttcctgtggcttctatcctattgtgcttattcattttttcatccggagctgtatttaattgatttggttttgtttcagGGATGCCGATCTCCAAAGCGTTTGCTCAAATAGAGCAACAGCCTAACATTTACGATGTTGTCCACGTCAAGTATTTTGACGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193410135|gb|FK372958.1|FK372958
EST:     CATCGTTCTCGATCTCCGTCCCGGTCTCGGAATTGGACCCTTCTCCCTCG                         GGATGCCTATATGTGAAGCATTTGCTCAGATAGAGCAGCAACCTAACATAT
genomic: CATCGTTCTCGATCTCCGTCCCGGTCTCGGAATTGGACCCTTCTCCCTCGgtaattatta ... tgctgtttagGGATGCCTATATGTGAAGCATTTGCTCAGATAGAGCAGCAACCTAACATAT
EST: gi|193415174|gb|FK380092.1|FK380092
EST:     CATCGTTCTCGATCTCCGTCCCGGTCTCGGAATTGGACCCTTCTCCCTCG                         GGATGCCTATATGTGAAGCATTTGCTCAGATAGAGCAGCAACCTAACATAT
genomic: CATCGTTCTCGATCTCCGTCCCGGTCTCGGAATTGGACCCTTCTCCCTCGgtaattatta ... tgctgtttagGGATGCCTATATGTGAAGCATTTGCTCAGATAGAGCAGCAACCTAACATAT
EST: gi|27426508|gb|CA938028.1|CA938028
EST:     CATCGTTCTCGATCTCCGTCCCGGTCTCGGAATTGGACCCTTCTCCCTCG                         GGATGCCTATATGTGAAGCATTTGCTCAGATAGAGCAGCAACCTAACATAT
genomic: CATCGTTCTCGATCTCCGTCCCGGTCTCGGAATTGGACCCTTCTCCCTCGgtaattatta ... tgctgtttagGGATGCCTATATGTGAAGCATTTGCTCAGATAGAGCAGCAACCTAACATAT
EST: gi|23052777|gb|BU577268.1|BU577268
EST:     CATCGTTCTCGATCTCCGTCCCGGTCTCGGAATTGGACCCTTCTCCCTCG                         GGATGCCTATATGTGAAGCATTTGCTCAGATATTTTAGCAACCTAACATAT
genomic: CATCGTTCTCGATCTCCGTCCCGGTCTCGGAATTGGACCCTTCTCCCTCGgtaattatta ... tgctgtttagGGATGCCTATATGTGAAGCATTTGCTCAGATAGAGCAGCAACCTAACATAT
EST: gi|213595247|gb|DB963980.1|DB963980
EST:     CATCGTTCTCGATCTCCGTCCCGGTCTCGGAATTGGACCCTTCTCCCTCG                         GGATGCCTATATGTGAAGCATTTGCTCAGATAGAGCAGCAACCTAACATAT
genomic: CATCGTTCTCGATCTCCGTCCCGGTCTCGGAATTGGACCCTTCTCCCTCGgtaattatta ... tgctgtttagGGATGCCTATATGTGAAGCATTTGCTCAGATAGAGCAGCAACCTAACATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtgattctgtgtttactgacttggcttgttgccgttttcgtgtgctgtttagGGATGCCTATATGTGAAGCATTTGCTCAGATAGAGCAGCAACCTAACATATACGATGTGGTGCATGTCAAGTATTTTGATGAG
                tactgac  putative branch site (score: 1)