1 5' 3' |
...tgtgccctatgaaggtggtaagtaaataaagaaaattgatatcggtgatgattgtttcatttgtttgtggtgtgtgttaatattattacactttacacagGACGTGATGTTCGGAGGCACGGAAACGGTGGCGTCAGCAATCGAGTGGGTCATGTCGGAGCTGATGAGAAGCCCAGAAGACCAAAAGCGGGTCCAACAAG
species | Glycine max |
transcript | GLYMA11G07850.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TAACATCAAGGCTATCATTATG GACGTGATGTTCGGAGGCACGGAAACGGTGGCGTCAGCAATCGAGTGGGTCEST: gi|193561108|gb|FK520201.1|FK520201
genomic: TAACATCAAGGCTATCATTATGgtatggattc ... ctttacacagGACGTGATGTTCGGAGGCACGGAAACGGTGGCGTCAGCAATCGAGTGGGTC
EST: TGCAGAACTCTATCAGACTCACTAAGGATAACATCAAGGCTATCATTATG GACGTGATGTTCGGAGGCACGGAAACGGTGEST: gi|208051260|gb|GD846763.1|GD846763
genomic: TGCAGAACTCTATCAGACTCACTAAGGATAACATCAAGGCTATCATTATGgtatggattc ... ctttacacagGACGTGATGTTCGGAGGCACGGAAACGGTG
EST: TGCAGAACTCTATCGGACTCACTAAGGATAACATCAAGGCTATCATTATG GACGTGATGTTCGGAGGCGCGGAAACGGTGGCGTCAGCAATCGAGTGGGTCEST: gi|208237629|gb|GE028875.1|GE028875
genomic: TGCAGAACTCTATCAGACTCACTAAGGATAACATCAAGGCTATCATTATGgtatggattc ... ctttacacagGACGTGATGTTCGGAGGCACGGAAACGGTGGCGTCAGCAATCGAGTGGGTC
EST: TGCAGAACTCTATCAGACTCACTAAGGATAACATCAAGGCTATCATTATG GACGTGATGTTCGGAGGCACGGAAACGGTGGCGTCAGCAAT
genomic: TGCAGAACTCTATCAGACTCACTAAGGATAACATCAAGGCTATCATTATGgtatggattc ... ctttacacagGACGTGATGTTCGGAGGCACGGAAACGGTGGCGTCAGCAAT
tgatgattgtttcatttgtttgtggtgtgtgttaatattattacactttacacagGACGTGATGTTCGGAGGCACGGAAACGGTGGCGTCAGCAATCGAGTGGGTCATGTCGGAGCTGATGAGAAGCCCAGAAGACCAAAAGCGGGTCCAACAAG
tgttaat putative branch site (score: 3)
tgttaatattattaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgccctatgaaggtggtaagtaaataaagaaaattgatatcggtgatgattgtttcatttgtttgtggtgtgtgttaatattattacactttacacagGACGTGATGTTCGGAGGCACGGAAACGGTGGCGTCAGCAATCGAGTGGGTCATGTCGGAGCTGATGAGAAGCCCAGAAGACCAAAAGCGGGTCCAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- tgcccta
- - - - - - -ggtggta
- - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - -ggtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgtg