Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagccctaactctcaaaatctcttcgattctctctttccgcgtgttcattcgtttcttaggttgaattttgggattttatttgatgatgatgatgatgtatgtttcagAATCTGAGTAAGATTGCCTGCAATAGGCTCCAGAAAGAGCTCGTGGAGTGGCAGGTCAATCCCCCCACTGGTTTCAAGCACAAAGTCACAGACAATCTCC

Basic information

species Glycine max
transcript GLYMA11G07810.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07810.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os03g47770.1 (Oryza sativa), 3'ss of exon 1
-----------------------------gttagccctaa--ctctcaaaatctcttcgattctctctttccg--cgtgttcattcgtttcttaggttgaattttgggattttatttgatgatgatgatgatgtatgttt-------cagAATCTGAGTAAGATTGCCTGCAATAGGCTCCAGAAAGAGCTCGTGGAGTGGCAGGTCAATCCCCCCACTGGTTTCAAGCACAAAGTCACAGACAATCTCC
                              |   |||| |  | |||   ||| | ||    |||     |    ||   | ||| ||||    ||||   || |     | | |  | || |  ||    ||||||| |       |||   ||||| ||||| || |||||  |||| ||||| ||||||| ||||||||||||||| || ||| | || ||||||||||| ||||| ||||||||||
gtaccaaaccctaaccctaaccccctcctctctaccctcatcccctccggatcccatctcccctccgccccgattcgccgtaatttgttttgggggtttttttctctctctctctgagctgtttgtgtgtgtgtatgtgtgttcgtgcagGTGCTGAGCAAGATCGCGTGCAACCGGCTGCAGAAGGAGCTCGCGGAGTGGCAGGTCAACCCTCCCTCCGGCTTCAAGCACAAGGTCACCGACAATCTCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15664873|gb|BI702244.1|BI702244
EST:     AGAATCATGACGAGTTCCTCTGCTGCCGCTCGCAAG                         AATCTGAGTAAGATTGCCTGCAATAGGCTCCAGAAAGAGCTCGTGGAGTGG
genomic: AGAATCATGACGAGTTCCTCTGCTGCCGCTCGCAAGgttagcccta ... tatgtttcagAATCTGAGTAAGATTGCCTGCAATAGGCTCCAGAAAGAGCTCGTGGAGTGG
EST: gi|10237961|gb|BE806849.1|BE806849
EST:     CGTGTACGCGCAAAAGAATCATGACGAGTTCCTCTGCTGCCGCTCGCAAG                         AATCTGAGTAAGATTGCCTGCAATAGGCTCCAGAAAGAGCTCGTGGAGTGG
genomic: CGTGTACGCGCAAAAGAATCATGACGAGTTCCTCTGCTGCCGCTCGCAAGgttagcccta ... tatgtttcagAATCTGAGTAAGATTGCCTGCAATAGGCTCCAGAAAGAGCTCGTGGAGTGG
EST: gi|254317299|gb|GR826244.1|GR826244
EST:     CGTGTACGCGCAAAAGAATCATGACGAGTTCCTCTGCTGCCGCTCGCAAG                         AATCTGAGTAAGATTGCCTGCAATAGGCTCCAGAAAGAGCTCGTGGAGTGG
genomic: CGTGTACGCGCAAAAGAATCATGACGAGTTCCTCTGCTGCCGCTCGCAAGgttagcccta ... tatgtttcagAATCTGAGTAAGATTGCCTGCAATAGGCTCCAGAAAGAGCTCGTGGAGTGG
EST: gi|151393796|gb|EV263671.1|EV263671
EST:     CGTGTACGCGCAAAAGAATCATGACGAGTTCCTCTGCTGCCGCTCGCAAG                         AATCTGAGTAAGATTGCCTGCAATAGGCTCCAGAAAGAGCTCGTGGAGTGG
genomic: CGTGTACGCGCAAAAGAATCATGACGAGTTCCTCTGCTGCCGCTCGCAAGgttagcccta ... tatgtttcagAATCTGAGTAAGATTGCCTGCAATAGGCTCCAGAAAGAGCTCGTGGAGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttaggttgaattttgggattttatttgatgatgatgatgatgtatgtttcagAATCTGAGTAAGATTGCCTGCAATAGGCTCCAGAAAGAGCTCGTGGAGTGGCAGGTCAATCCCCCCACTGGTTTCAAGCACAAAGTCACAGACAATCTCC
                         atttgat  putative branch site (score: 5)
                    attttatttgatgat  TA-rich tract