1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaccccaccctttactcttcctctcttctccaactctcactcacagtaaaaccctaatagatgcaatctcgcacgatccaattttacttttattgcttaatttgattgctttttagCAAGATGGTGGTATTTCGTTCAAAGATGCGTGGATGCACCTAACCGATGAATATCCAATCAAATATGAAGCCGAACGCCTTCCGCCGCCGCTCGTCGCTG
species | Glycine max |
transcript | GLYMA11G07720.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTTGGCCATTCTTATGCTCTCCGCTTTCGCTATTTTCTTCACTCTTCAG CAAGATGGTGGTATTTCGTTCAAAGATGCGTGGATGCACCTAACCGATGAAEST: gi|298185143|gb|HO030356.1|HO030356
genomic: ATTTGGCCATTCTTATGCTCTCCGCTTTCGCTATTTTCTTCACTCTTCAGgtaccccacc ... tgctttttagCAAGATGGTGGTATTTCGTTCAAAGATGCGTGGATGCACCTAACCGATGAA
EST: ATTTGGCCATTCTTATGCTCTCCGCTTTCGCTATTTTCTTCACTCTTCAG CAAGATGGTGGTATTTCGTTCAAAGATGCGTGGATGCACCTAACCGATGAAEST: gi|209705770|gb|BW661438.1|BW661438
genomic: ATTTGGCCATTCTTATGCTCTCCGCTTTCGCTATTTTCTTCACTCTTCAGgtaccccacc ... tgctttttagCAAGATGGTGGTATTTCGTTCAAAGATGCGTGGATGCACCTAACCGATGAA
EST: ATTTGGCCATTCTTATGCTCTCCGCTTTCGCTATTTTCTTCACTCTTCAG CAAGATGGTGGTATTTCGTTCAAAGATGCGTGGATGCACCTAACCGATGAA
genomic: ATTTGGCCATTCTTATGCTCTCCGCTTTCGCTATTTTCTTCACTCTTCAGgtaccccacc ... tgctttttagCAAGATGGTGGTATTTCGTTCAAAGATGCGTGGATGCACCTAACCGATGAA
tgcaatctcgcacgatccaattttacttttattgcttaatttgattgctttttagCAAGATGGTGGTATTTCGTTCAAAGATGCGTGGATGCACCTAACCGATGAATATCCAATCAAATATGAAGCCGAACGCCTTCCGCCGCCGCTCGTCGCTG
ttgcttttt CT-rich tract
aattttacttttattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccccaccctttactcttcctctcttctccaactctcactcacagtaaaaccctaatagatgcaatctcgcacgatccaattttacttttattgcttaatttgattgctttttagCAAGATGGTGGTATTTCGTTCAAAGATGCGTGGATGCACCTAACCGATGAATATCCAATCAAATATGAAGCCGAACGCCTTCCGCCGCCGCTCGTCGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC