1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...attaacaaactaacgtttggtgtcaaaaaaaaaagagtcctaatgattttgattgatagtgtcttattttgtgtgtgtgatattttttatgcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAACCTCACCCTAAGCTCAATGAAAGAATTCTGTCTTCTCTGTCACGGAGA
species | Glycine max |
transcript | GLYMA11G07530.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|12689521|gb|BG155857.1|BG155857
genomic: CTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: TCTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|10235681|gb|BE804569.1|BE804569
genomic: TCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: ACCTCTGAACTCTCTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|192316515|gb|FK009312.1|FK009312
genomic: ACCTCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: GCACTTTCTTTCACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|15661703|gb|BI699074.1|BI699074
genomic: GCACTTTCTTTCACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: CTGAACTCTCTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|19452855|gb|BM954265.1|BM954265
genomic: CTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: AGTCACCACCTCTGAACTCTCTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|192333273|gb|FK026154.1|FK026154
genomic: AGTCACCACCTCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: GCACTTTCTTTCACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|15814337|gb|BI786612.1|BI786612
genomic: GCACTTTCTTTCACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: ACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|6481455|gb|AW200726.1|AW200726
genomic: ACTCACCAGTCACCACCTCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: CACCAGTCACCACCTGGGAACTCTCTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAEST: gi|15203687|gb|BI426455.1|BI426455
genomic: CACCAGTCACCACCTCTGAACTCTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
EST: CTCTCTCTCATCT ATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
genomic: CTCTCTCTCATCTgtaagttctt ... gcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAA
attttgattgatagtgtcttattttgtgtgtgtgatattttttatgcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAACCTCACCCTAAGCTCAATGAAAGAATTCTGTCTTCTCTGTCACGGAGA
gattgat putative branch site (score: 4)
atattttttatgctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attaacaaactaacgtttggtgtcaaaaaaaaaagagtcctaatgattttgattgatagtgtcttattttgtgtgtgtgatattttttatgcttatgtagATAAGTCAACATGGCTCATCATGAAGATTCAAGTGCATGGAATTCGAGTAAACCTCACCCTAAGCTCAATGAAAGAATTCTGTCTTCTCTGTCACGGAGA
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