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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgataaattcttcacctcttgtgttgcctaatcttttttctttttttccctttagggttttctgtttcttatgttatgtttctcttttgtgcatgaatagCCTGGTCCTCGTGATTCTCCAATACAGTGTTTTATCAGGAGGAACAGAGAAACTTCAACATATCTGTTGTACATTGGCCTGGTACCAT

Basic information

species Glycine max
transcript GLYMA11G07410.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07410.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv04s0023g01950.t01 (Vitis vinifera), 3'ss of exon 1
gtgataaattcttc----acctcttgtgttgcctaatcttttttcttttt--ttccctt---tagggttttctgtttcttatg------ttatgtttctcttt-tgtgcatgaatagCCTGGTCCTCGTGATTCTCCAATACAGTGTTTTATCAGGAGGAACAGAGAAACTTCAACATATCTGTTGTACATTGGCCTGGTACCAT
|| ||   || ||     | || || |||    |  | | |||  ||| |  || ||||   ||    ||  ||  | |||||      ||||  |||||||| |     | ||||||| || || |||||||||||||||||||| ||||| || ||| | ||||  || || |||||||| |||||| ||||||||  ||| |
gtaatcctttttttgttaatcttttttgtctttttgtttctttggtttctagtttccttgtatactaattattgccttttatgaatgtcttattcttctctttataattctaaatagCCGGGGCCACGTGATTCTCCAATACAGTGCTTTATTAGAAGGGATAGAGCCACCTCTACATATCTTTTGTACTTTGGCCTGACACCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208281105|gb|GE079707.1|GE079707
EST:     GCTCACATTTCCCATTTCATTGAAGCAG                         CCTGGTCCTCGTGATTCTCCAATACAGTGTTTTATCAGGAGGAACAGAGAA
genomic: GCTCACATTTCCCATTTCATTGAAGCAGgtgataaatt ... gcatgaatagCCTGGTCCTCGTGATTCTCCAATACAGTGTTTTATCAGGAGGAACAGAGAA
EST: gi|208272362|gb|GE065840.1|GE065840
EST:     AGACCCCTGAACAATGTGGAAGGCTCACATTTCCCATTTCATTGAAGCAG                         CCTGGTCCTCGTGATTCTCCAATACAGTGTTTTANCAGGAGGAACAGAGAA
genomic: AGACTCCTGAACAATGTGGAAGGCTCACATTTCCCATTTCATTGAAGCAGgtgataaatt ... gcatgaatagCCTGGTCCTCGTGATTCTCCAATACAGTGTTTTATCAGGAGGAACAGAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccctttagggttttctgtttcttatgttatgtttctcttttgtgcatgaatagCCTGGTCCTCGTGATTCTCCAATACAGTGTTTTATCAGGAGGAACAGAGAAACTTCAACATATCTGTTGTACATTGGCCTGGTACCAT
                                 tttctcttttgtgc  CT-rich tract
                       ttatgttat  TA-rich tract