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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaatctaggtcttatttggataaacttttcaataaacacttataagagaagaaaataagaatacaaaatgaaataaggttctttggagttaaaattagcttatgcactgagttgctgcataacaatcacaaaatacttttgacattcactggtttctgaccgagtgcatgattgtatgcagTATGCTCAAAGCTCTTCATCAAACATAATCAGTCTAGCAGAACATCTTGGCACACGAATATCTGATCATGTTCCAGTGACACCTAACAAACTTTCTGAGG

Basic information

species Glycine max
transcript GLYMA11G06610.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G06610.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv00s0207g00120.t01 (Vitis vinifera), 3'ss of exon 7
gtaaaaatctaggtcttatttggataaacttttcaataaacacttataagagaagaaaataagaatacaaaatgaaataaggttctttggagttaaaattagcttatgcactgagttgctgcataacaatcacaaaatacttttgacattcactggtttctgaccgagtgcatgattgtatgcagTATGCTCAAAGCTCTTCATCAAACATAATCAGTCTAGCAGAACATCTTGGCACACGAATATCTGATCATGTTCCAGTGACACCTAACAAACTTTCTGAGG
                                                                  || |  ||  | || |  | | |||   |||||  |||  ||   || |  |||| ||         |   |  ||          |||  || | ||  ||||     || | | ||||||||||| |   |||| |||||  |||||||||| ||||| |||||||| || || || |||||||||||||||| ||||||||||| | |||||||||
-----------------------------------------------------------------caccagctgttacaacgaccatagga---aaaat--gctggtg--atgggaagctgtattttggatgtatggttatt----------ctgtattgtaactcagtg---acttctgtacagTATGCTCAGAATACTTCTTCAAATGTAATCAGTCTGGCAGAGCATCTTGGAACCCGTATTTCTGATCATGTTCCAGAGACACCTAACAGAATTTCTGAGG

upper sequence: GLYMA11G06610.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv00s0207g00150.t01 (Vitis vinifera), 3'ss of exon 4
gtaaaaatctaggtcttatttggataaacttttcaataaacacttataagagaagaaaataagaatacaaaatgaaataaggttctttggagttaaaattagcttatgcactgagttgctgcataacaatcacaaaatacttttgacattcactggtttctgaccgagtgcatgattgtatgcagTATGCTCAAAGCTCTTCATCAAACATAATCAGTCTAGCAGAACATCTTGGCACACGAATATCTGATCATGTTCCAGTGACACCTAACAAACTTTCTGAGG
                                                                  || |  ||  | || |  | | |||   |||||  |||  ||   || |  |||| ||         |   |  ||          |||  || | ||| ||||     || | | ||||||||||| |   |||| |||||  |||||||||| ||||| |||||||| || || || |||||||||||||||| ||||||||||| | |||||||||
-----------------------------------------------------------------caccagctgttacaacgaccatagga---aaaat--gctggtg--atgggaagctgtattttggatgtatggttatt----------ctgtattgtaacccagtg---acttctgtacagTATGCTCAGAATACTTCTTCAAATGTAATCAGTCTGGCAGAGCATCTTGGAACCCGTATTTCTGATCATGTTCCAGAGACACCTAACAGAATTTCTGAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14999659|gb|BI320484.1|BI320484
EST:     TAGCTAAATCTCTGCGTGCCTGTCATTCCCAGCCGTTGTCCATGTTAGAG                         TATGCTCAAAGCTCTTCATCAAACATAATCAGTCTAGCAGAACATCTTGGC
genomic: TAGCTAAATCTCTGCGTGCCTGTCATTCCCAGCCGTTGTCCATGTTAGAGgtaaaaatct ... ttgtatgcagTATGCTCAAAGCTCTTCATCAAACATAATCAGTCTAGCAGAACATCTTGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacaaaatacttttgacattcactggtttctgaccgagtgcatgattgtatgcagTATGCTCAAAGCTCTTCATCAAACATAATCAGTCTAGCAGAACATCTTGGCACACGAATATCTGATCATGTTCCAGTGACACCTAACAAACTTTCTGAGG
                           ttctgac  putative branch site (score: 2)
     aatactttt  TA-rich tract