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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaattaattttcgccggttaattaattaattaatatttcaggcgtatttatgagttactactaattaatatttatcatatattagaatgtgttttgtattttatggatggtgcttgaatgaattaaaattacagTTCTGGAACATCTGCCGGCGAGAGAAAGTTGATGCCAACCATTCATGAAGAAATGGACCGTCGTCAGTTACTGTACAGCCTGCTCATGCCTGTGATGAAC

Basic information

species Glycine max
transcript GLYMA11G05510.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G05510.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv07s0129g00660.t01 (Vitis vinifera), 3'ss of exon 1
gtacaattaattttcgccggttaattaattaattaatatttcaggcgtatttatgagttactactaattaatatttatcatatattagaatgtgttttgtattttatggatggtgcttgaatgaattaaaattacagTTCTGGAACATCTGCCGGCGAGAGAAAGTTGATGCCAACCATTCATGAAGAAATGGACCGTCGTCAGTTACTGTACAGCCTGCTCATGCCTGTGATGAAC
                                      | | |  |     | || | |  || || | ||| | | |  | | | |   |||   |     ||| | ||| ||   ||   |  || ||  | ||||||||| || ||||| || ||||| ||| | |||||||| |||||||||||   ||| ||||| |||  ||| |||||||| |||||||| |||||||||
-------------------------------------gtctgattctagcctctgtggtcttaata-taaatgtgtgtgctgtgtgactgtgtaagtgaatgttttttgattgt---tggg-ggtttgaatctgcagTTCTGGGACTTCTGCTGGTGAGAGGAAGCTTATGCCAACGATTCATGAAGAGTGGGATCGTCGCCAGAAACTTTACAGCCTTCTCATGCCAGTGATGAAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattagaatgtgttttgtattttatggatggtgcttgaatgaattaaaattacagTTCTGGAACATCTGCCGGCGAGAGAAAGTTGATGCCAACCATTCATGAAGAAATGGACCGTCGTCAGTTACTGTACAGCCTGCTCATGCCTGTGATGAAC
                                  ttgaatgaattaaaat  TA-rich tract