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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acttgataatacttataagtaatgcttttatctccccaacacgaaaaatgtgacatctccatgttttacttctccaagacttactctcttcttactgcagGAGAAGATCAGGGTTGCAGTTTTGGTTTCCAAAGCAGCACTTCAATTTATCCTAG

Basic information

species Glycine max
transcript GLYMA11G05190.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G05190.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv07s0129g00110.t01 (Vitis vinifera), 3'ss of exon 1
-acttgataatacttataagtaatgcttttatctccccaacacgaaaaatgtgacatctccatgttttacttctccaagacttactctcttcttactgcagGAGAAGATCAGGGTTGCAGTTTTGGTTTCCAAAGCAGCACTTCAATTTATCCTAG
 |   |    | |  | |  ||||   | | |   |  |||    | ||| || | |||  ||  |||| |     |    || || | ||| || || |||||||  | ||  |||| || |||||||||||||||||| |||||||||||| ||
aagaaggctttgccaacacataatatctcttttaacataactatgagaatttgtcctctgtattgtttagtgactaactcttttctgtattcata-tgtagGAGAAATTGAGAATTGCGGTATTGGTTTCCAAAGCAGCATTTCAATTTATCCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatgtgacatctccatgttttacttctccaagacttactctcttcttactgcagGAGAAGATCAGGGTTGCAGTTTTGGTTTCCAAAGCAGCACTTCAATTTATCCTAG
                                           ttcttac  putative branch site (score: 2)
                                  cttactctcttcttac  CT-rich tract
               atgtttta  TA-rich tract